YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153190562, gi...
Organism:	Listeria monocytogenes J2818
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153190562, gi....

Description	E-value	Query Range	Subject Range
gi\|227553431, gi... - gi\|227553431\|ref\|ZP_03983480.1\| ethanolamine utilization protein EutL [Enterococcus faecalis HH22], ... gi\|227518815, gi... - gi\|227518815\|ref\|ZP_03948864.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX0104]... gi\|238856523, gi... - gi\|238856523\|ref\|ZP_04646789.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TUSoD E... gi\|29376185, gi\|... - gi\|29376185\|ref\|NP_815339.1\| ethanolamine utilization protein EutL [Enterococcus faecalis V583], gi\|... gi\|229549950, gi... - gi\|229549950\|ref\|ZP_04438675.1\| ethanolamine utilization protein EutL [Enterococcus faecalis ATCC 29... gi\|229545760, gi... - gi\|229545760\|ref\|ZP_04434485.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX1332]...	312.0	[0..1]	[217..1]
gi\|254872853 - gi\|254872853\|ref\|ZP_05245563.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL N1... gi\|254823569 - gi\|254823569\|ref\|ZP_05228570.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL J1... gi\|255520263 - gi\|255520263\|ref\|ZP_05387500.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL J1... gi\|254992167 - gi\|254992167\|ref\|ZP_05274357.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL J2... gi\|217964754, gi... - gi\|217964754\|ref\|YP_002350432.1\| ethanolamine utilization protein [Listeria monocytogenes HCC23], gi... gi\|46880665, gi\|... - gi\|46907397\|ref\|YP_013786.1\| ethanolamine utilization protein [Listeria monocytogenes str. 4b F2365]... gi\|47091978, gi\|... - gi\|47091978\|ref\|ZP_00229772.1\| ethanolamine utilization protein [Listeria monocytogenes str. 4b H785... gi\|226223778, gi... - gi\|226223778\|ref\|YP_002757885.1\| carboxysome structural protein (eutL) [Listeria monocytogenes Clip8... gi\|153201888, gi... - gi\|254932944\|ref\|ZP_05266303.1\| carboxysome structural protein (eutL) [Listeria monocytogenes HPB226...	308.0	[0..1]	[217..1]
gi\|16800210 - gi\|16800210\|ref\|NP_470478.1\| hypothetical protein lin1141 [Listeria innocua Clip11262] gi\|16413600, gi\|... - pir\|\|AD1575 probable carboxysome structural protein (eutL) homolog lin1141 [imported] - Listeria inn...	306.0	[0..1]	[217..1]
gi\|110801147, gi... - gi\|110801147\|ref\|YP_695342.1\| ethanolamine utilization protein EutL [Clostridium perfringens ATCC 13... gi\|170712714, gi... - gi\|170712714\|gb\|EDT24896.1\| ethanolamine utilization protein EutL [Clostridium perfringens B str. AT... gi\|168204926, gi... - gi\|170663382\|gb\|EDT16065.1\| ethanolamine utilization protein EutL [Clostridium perfringens E str. JG... gi\|182624995, gi... - gi\|182624995\|ref\|ZP_02952773.1\| ethanolamine utilization protein EutL [Clostridium perfringens D str... gi\|182381621, gi... - gi\|182381621\|gb\|EDT79100.1\| ethanolamine utilization protein EutL [Clostridium perfringens NCTC 8239... gi\|170715982, gi... - gi\|170715982\|gb\|EDT28164.1\| ethanolamine utilization protein EutL [Clostridium perfringens CPE str. ... gi\|18309882, gi\|... - gi\|18309882\|ref\|NP_561816.1\| ethanolamine utilization protein [Clostridium perfringens str. 13], gi\|...	305.0	[0..1]	[217..1]
gi\|255101041 - gi\|255101041\|ref\|ZP_05330018.1\| putative ethanolamine/propanediol utilization protein [Clostridium d... gi\|115250962, gi... - gi\|126699525\|ref\|YP_001088422.1\| putative ethanolamine/propanediol utilization protein [Clostridium ...	300.0	[0..1]	[217..1]
gi\|106885045, gi... - gi\|160880776\|ref\|YP_001559744.1\| microcompartments protein [Clostridium phytofermentans ISDg], gi\|16...	298.0	[0..1]	[217..1]
gi\|77684280, gi\|... - gi\|77684280\|ref\|ZP_00799714.1\| Polyhedral organelle shell protein, EutL/PduB type [Alkaliphilus meta...	297.0	[0..1]	[217..1]
gi\|19703433, gi\|... - gi\|19713509\|gb\|AAL94294.1\| Ethanolamine utilization protein eutL [Fusobacterium nucleatum subsp. nuc...	296.0	[0..1]	[216..1]
gi\|28204225, gi\|... - gi\|28211783\|ref\|NP_782727.1\| ethanolamine utilization protein eutL [Clostridium tetani E88], gi\|2820...	290.0	[0..1]	[217..1]
gi\|26109221, gi\|... - gi\|26248815\|ref\|NP_754855.1\| ethanolamine utilization protein eutL [Escherichia coli CFT073], gi\|261... gi\|110344212, gi... - gi\|110642620\|ref\|YP_670350.1\| ethanolamine utilization protein EutL [Escherichia coli 536], gi\|11034... gi\|227887484, gi... - gi\|227887484\|ref\|ZP_04005289.1\| ethanolamine utilization protein EutL [Escherichia coli 83972], gi\|2... gi\|237704962, gi... - gi\|237704962\|ref\|ZP_04535443.1\| ethanolamine utilization protein EutL [Escherichia sp. 3_2_53FAA], g... gi\|190906785, gi... - gi\|75240097\|ref\|ZP_00724056.1\| COG4816: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|218559384, gi... - gi\|218559384\|ref\|YP_002392297.1\| putative carboxysome-related structural protein with putative role ... gi\|91073351, gi\|... - gi\|91211777\|ref\|YP_541763.1\| ethanolamine utilization protein EutL [Escherichia coli UTI89], gi\|9107... gi\|117624644, gi... - gi\|117624644\|ref\|YP_853557.1\| ethanolamine utilization protein EutL [Escherichia coli APEC O1], gi\|1...	284.0	[0..4]	[216..5]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNDKLPASV LSVKVVSNVD NGLFKQLDLK PHQRSLGIIT SDCDDVTYTA LDEATKAAEV  60
   61 DVVYAKSMYA GAGNASTKFA GEVIGIIAGP SPAEVKSGLA VAVDFIENGA SFVSANEDDS 120
  121 VPYFAHCVSR TGTFLSKEAN VAEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [145-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAIAYLIAPP LEAMYALDAA LKAADVTIGA FYGPPSETNF GGALLTGSQS ACKAACDAFK  60
   61 MAVENVAENP LQY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.72
Match:	2ewhA
Description:	No description for 2ewhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits