YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254936174, gi...
Organism:	Listeria monocytogenes F6900
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254936174, gi....

Description	E-value	Query Range	Subject Range
gi\|227553431, gi... - gi\|227553431\|ref\|ZP_03983480.1\| ethanolamine utilization protein EutL [Enterococcus faecalis HH22], ... gi\|227518815, gi... - gi\|227518815\|ref\|ZP_03948864.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX0104]... gi\|238856523, gi... - gi\|238856523\|ref\|ZP_04646789.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TUSoD E... gi\|29376185, gi\|... - gi\|29376185\|ref\|NP_815339.1\| ethanolamine utilization protein EutL [Enterococcus faecalis V583], gi\|... gi\|229549950, gi... - gi\|229549950\|ref\|ZP_04438675.1\| ethanolamine utilization protein EutL [Enterococcus faecalis ATCC 29... gi\|229545760, gi... - gi\|229545760\|ref\|ZP_04434485.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX1332]...	312.0	[0..1]	[217..1]
gi\|254872853 - gi\|254872853\|ref\|ZP_05245563.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL N1... gi\|254823569 - gi\|254823569\|ref\|ZP_05228570.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL J1... gi\|255520263 - gi\|255520263\|ref\|ZP_05387500.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL J1... gi\|254992167 - gi\|254992167\|ref\|ZP_05274357.1\| carboxysome structural protein (eutL) [Listeria monocytogenes FSL J2... gi\|217964754, gi... - gi\|217964754\|ref\|YP_002350432.1\| ethanolamine utilization protein [Listeria monocytogenes HCC23], gi... gi\|46880665, gi\|... - gi\|46907397\|ref\|YP_013786.1\| ethanolamine utilization protein [Listeria monocytogenes str. 4b F2365]... gi\|47091978, gi\|... - gi\|47091978\|ref\|ZP_00229772.1\| ethanolamine utilization protein [Listeria monocytogenes str. 4b H785... gi\|226223778, gi... - gi\|226223778\|ref\|YP_002757885.1\| carboxysome structural protein (eutL) [Listeria monocytogenes Clip8... gi\|153201888, gi... - gi\|254932944\|ref\|ZP_05266303.1\| carboxysome structural protein (eutL) [Listeria monocytogenes HPB226...	308.0	[0..1]	[217..1]
gi\|16800210 - gi\|16800210\|ref\|NP_470478.1\| hypothetical protein lin1141 [Listeria innocua Clip11262] gi\|16413600, gi\|... - pir\|\|AD1575 probable carboxysome structural protein (eutL) homolog lin1141 [imported] - Listeria inn...	306.0	[0..1]	[217..1]
gi\|110801147, gi... - gi\|110801147\|ref\|YP_695342.1\| ethanolamine utilization protein EutL [Clostridium perfringens ATCC 13... gi\|170712714, gi... - gi\|170712714\|gb\|EDT24896.1\| ethanolamine utilization protein EutL [Clostridium perfringens B str. AT... gi\|168204926, gi... - gi\|170663382\|gb\|EDT16065.1\| ethanolamine utilization protein EutL [Clostridium perfringens E str. JG... gi\|182624995, gi... - gi\|182624995\|ref\|ZP_02952773.1\| ethanolamine utilization protein EutL [Clostridium perfringens D str... gi\|182381621, gi... - gi\|182381621\|gb\|EDT79100.1\| ethanolamine utilization protein EutL [Clostridium perfringens NCTC 8239... gi\|170715982, gi... - gi\|170715982\|gb\|EDT28164.1\| ethanolamine utilization protein EutL [Clostridium perfringens CPE str. ... gi\|18309882, gi\|... - gi\|18309882\|ref\|NP_561816.1\| ethanolamine utilization protein [Clostridium perfringens str. 13], gi\|...	305.0	[0..1]	[217..1]
gi\|255101041 - gi\|255101041\|ref\|ZP_05330018.1\| putative ethanolamine/propanediol utilization protein [Clostridium d... gi\|115250962, gi... - gi\|126699525\|ref\|YP_001088422.1\| putative ethanolamine/propanediol utilization protein [Clostridium ...	300.0	[0..1]	[217..1]
gi\|106885045, gi... - gi\|160880776\|ref\|YP_001559744.1\| microcompartments protein [Clostridium phytofermentans ISDg], gi\|16...	298.0	[0..1]	[217..1]
gi\|77684280, gi\|... - gi\|77684280\|ref\|ZP_00799714.1\| Polyhedral organelle shell protein, EutL/PduB type [Alkaliphilus meta...	297.0	[0..1]	[217..1]
gi\|19703433, gi\|... - gi\|19713509\|gb\|AAL94294.1\| Ethanolamine utilization protein eutL [Fusobacterium nucleatum subsp. nuc...	296.0	[0..1]	[216..1]
gi\|28204225, gi\|... - gi\|28211783\|ref\|NP_782727.1\| ethanolamine utilization protein eutL [Clostridium tetani E88], gi\|2820...	290.0	[0..1]	[217..1]
gi\|26109221, gi\|... - gi\|26248815\|ref\|NP_754855.1\| ethanolamine utilization protein eutL [Escherichia coli CFT073], gi\|261... gi\|110344212, gi... - gi\|110642620\|ref\|YP_670350.1\| ethanolamine utilization protein EutL [Escherichia coli 536], gi\|11034... gi\|227887484, gi... - gi\|227887484\|ref\|ZP_04005289.1\| ethanolamine utilization protein EutL [Escherichia coli 83972], gi\|2... gi\|237704962, gi... - gi\|237704962\|ref\|ZP_04535443.1\| ethanolamine utilization protein EutL [Escherichia sp. 3_2_53FAA], g... gi\|190906785, gi... - gi\|75240097\|ref\|ZP_00724056.1\| COG4816: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|218559384, gi... - gi\|218559384\|ref\|YP_002392297.1\| putative carboxysome-related structural protein with putative role ... gi\|91073351, gi\|... - gi\|91211777\|ref\|YP_541763.1\| ethanolamine utilization protein EutL [Escherichia coli UTI89], gi\|9107... gi\|117624644, gi... - gi\|117624644\|ref\|YP_853557.1\| ethanolamine utilization protein EutL [Escherichia coli APEC O1], gi\|1...	284.0	[0..4]	[216..5]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNDKLPASV LSVKVVSNVD NGLFKQLDLK PHQRSLGIIT SDCDDVTYTA LDEATKAAEV  60
   61 DVVYAKSMYA GAGNASTKFA GEVIGIIAGP SPAEVKSGLA VAVDFIENGA SFVSANEDDS 120
  121 VPYFAHCVSR TGTFLSKEAN VAEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.620	d.93.1	SH2 domain
View	Download	0.643	b.55.1	PH domain-like
View	Download	0.588	d.93.1	SH2 domain
View	Download	0.498	d.93.1	SH2 domain
View	Download	0.494	d.93.1	SH2 domain

Predicted Domain #2

Region A:
Residues: [145-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAIAYLIAPP LEAMYALDAA LKAADVTIGA FYGPPSETNF GGALLTGSQS ACKAACDAFK  60
   61 MAVENVAENP LQY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.72
Match:	2ewhA
Description:	No description for 2ewhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits