YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124531096, gi...
Organism:	Escherichia coli B
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124531096, gi....

Description	E-value	Query Range	Subject Range
gi\|238795649, gi... - gi\|77960502\|ref\|ZP_00824370.1\| COG1291: Flagellar motor component [Yersinia mollaretii ATCC 43969], ...	244.0	[0..1]	[295..1]
gi\|77976912, gi\|... - gi\|77976912\|ref\|ZP_00832378.1\| COG1291: Flagellar motor component [Yersinia intermedia ATCC 29909], ...	242.0	[0..1]	[295..1]
gi\|26108561, gi\|... - gi\|26248157\|ref\|NP_754197.1\| flagellar motor protein MotA [Escherichia coli CFT073], gi\|26108561\|gb\|...	242.0	[0..1]	[295..1]
gi\|62128133, gi\|... - gi\|62180500\|ref\|YP_216917.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|56127415, gi\|... - gi\|56413158\|ref\|YP_150233.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|161613517, gi... - gi\|161613517\|ref\|YP_001587482.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|167552437, gi... - gi\|205322878\|gb\|EDZ10717.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sai... gi\|205327857, gi... - gi\|205327857\|gb\|EDZ14621.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar 4,[... gi\|205331990, gi... - gi\|205331990\|gb\|EDZ18754.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Ken... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium GN=motA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=motA] [protein=flagellar motor protein MotA] [protein_id=YP_005237891.1] [location=complement(... gi\|200389572, gi... - gi\|200389572\|ref\|ZP_03216183.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|204931070, gi... - gi\|204931070\|ref\|ZP_03221896.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|224468100, gi... - gi\|224583573\|ref\|YP_002637371.1\| flagellar motor protein [Salmonella enterica subsp. enterica serova... MOTA_SALTY - Chemotaxis protein motA OS=Salmonella typhimurium GN=motA PE=3 SV=1 gi\|194735541, gi... - gi\|194735541\|ref\|YP_002114960.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197248635, gi... - gi\|197248635\|ref\|YP_002146097.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197244243, gi... - gi\|197265988\|ref\|ZP_03166062.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197937986, gi... - gi\|198243470\|ref\|YP_002215159.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|205342756, gi... - gi\|205342756\|gb\|EDZ29520.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Wel... gi\|194444912, gi... - gi\|194444912\|ref\|YP_002041190.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|194408818, gi... - gi\|194450514\|ref\|YP_002045978.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|194468783, gi... - gi\|194468783\|ref\|ZP_03074767.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197288649, gi... - gi\|197288649\|gb\|EDY28024.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sch... gi\|238912500 - gi\|238912500\|ref\|ZP_04656337.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|168241556, gi... - gi\|205339404\|gb\|EDZ26168.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Hei... gi\|205350824, gi... - gi\|205350824\|gb\|EDZ37455.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Had... gi\|195634498, gi... - gi\|195634498\|gb\|EDX52850.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar New... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=motA PE=3 SV=1	241.0	[0..1]	[295..1]
gi\|238785461, gi... - gi\|77957115\|ref\|ZP_00821180.1\| COG1291: Flagellar motor component [Yersinia bercovieri ATCC 43970], ...	241.0	[0..1]	[295..1]
gi\|13362068, gi\|... - gi\|15831854\|ref\|NP_310627.1\| flagellar motor protein [Escherichia coli O157:H7], gi\|13362068\|dbj\|BAB... gi\|208819593, gi... - gi\|208819593\|ref\|ZP_03259913.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|209767216, gi... - pir\|\|D85802 proton conductor component of motor [imported] - Escherichia coli (strain O157:H7, subst... gi\|208731012, gi... - gi\|208816669\|ref\|ZP_03257789.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|208810209, gi... - gi\|208810209\|ref\|ZP_03252085.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|15802302, gi\|... - gi\|15802302\|ref\|NP_288327.1\| flagellar motor protein MotA [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|195939594 - gi\|195939594\|ref\|ZP_03084976.1\| flagellar motor protein MotA [Escherichia coli O157:H7 str. EC4024] gi\|13362068, gi\|... - gi\|15831854\|ref\|NP_310627.1\| flagellar motor protein MotA [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217328719, gi... - gi\|217328719\|ref\|ZP_03444800.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|209396503, gi... - gi\|209396503\|ref\|YP_002270974.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|189360283, gi... - gi\|189360283\|gb\|EDU78702.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4486], gi\|16877... gi\|168762312, gi... - gi\|189367341\|gb\|EDU85757.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|189355203, gi... - gi\|189355203\|gb\|EDU73622.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|189376043, gi... - gi\|189376043\|gb\|EDU94459.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC508], gi\|168801... gi\|168789759, gi... - gi\|189370701\|gb\|EDU89117.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC869], gi\|168789... gi\|188999438, gi... - gi\|188999438\|gb\|EDU68424.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|187768064, gi... - gi\|187768064\|gb\|EDU31908.1\| chemotaxis protein MotA [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|254592914, gi... - gi\|254793514\|ref\|YP_003078351.1\| proton conductor component of flagella motor [Escherichia coli O157...	241.0	[0..1]	[295..1]
gi\|170518770, gi... - gi\|170681052\|ref\|YP_001743352.1\| chemotaxis protein MotA [Escherichia coli SMS-3-5], gi\|170518770\|gb... gi\|194417673, gi... - gi\|194434129\|ref\|ZP_03066398.1\| chemotaxis protein MotA [Shigella dysenteriae 1012], gi\|194417673\|gb... gi\|209912575, gi... - gi\|209919316\|ref\|YP_002293400.1\| flagellar motor protein MotA [Escherichia coli SE11], gi\|209912575\|... gi\|191168080, gi... - gi\|75228729\|ref\|ZP_00715342.1\| COG1291: Flagellar motor component [Escherichia coli B7A], gi\|1911680... gi\|75209433, gi\|... - gi\|75209433\|ref\|ZP_00709661.1\| COG1291: Flagellar motor component [Escherichia coli B171], gi\|194429... gi\|157156438, gi... - gi\|75190918\|ref\|ZP_00704185.1\| COG1291: Flagellar motor component [Escherichia coli E24377A], gi\|157...	241.0	[0..1]	[295..1]
gi\|218427450, gi... - gi\|218689886\|ref\|YP_002398098.1\| flagellar motor protein MotA [Escherichia coli ED1a], gi\|218427450\|... gi\|237705848, gi... - gi\|237705848\|ref\|ZP_04536329.1\| flagellar motor protein MotA [Escherichia sp. 3_2_53FAA], gi\|2269006... gi\|227885681, gi... - gi\|227885681\|ref\|ZP_04003486.1\| flagellar motor protein MotA [Escherichia coli 83972], gi\|227837254\|... gi\|91072688, gi\|... - gi\|91211114\|ref\|YP_541100.1\| flagellar motor protein MotA [Escherichia coli UTI89], gi\|91072688\|gb\|A... gi\|117624040, gi... - gi\|117624040\|ref\|YP_852953.1\| flagellar motor protein MotA [Escherichia coli APEC O1], gi\|115513164\|... gi\|215265173, gi... - gi\|215487101\|ref\|YP_002329532.1\| flagellar motor protein MotA [Escherichia coli O127:H6 str. E2348/6... gi\|218365522, gi... - gi\|218558753\|ref\|YP_002391666.1\| flagellar motor protein MotA [Escherichia coli S88], gi\|218365522\|e...	240.0	[0..1]	[295..1]
gi\|192926898, gi... - gi\|75256498\|ref\|ZP_00728144.1\| COG1291: Flagellar motor component [Escherichia coli E22], gi\|1930654...	240.0	[0..1]	[295..1]
gi\|213855851 - gi\|213855851\|ref\|ZP_03384091.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|29141436, gi\|... - gi\|29141436\|ref\|NP_804778.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|16760872 - gi\|16760872\|ref\|NP_456489.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|25298881, gi\|... - gi\|25298881\|pir\|\|AG0746 motility protein A [imported] - Salmonella enterica subsp. enterica serovar ... gi\|213647164 - gi\|213647164\|ref\|ZP_03377217.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|213622330 - gi\|213622330\|ref\|ZP_03375113.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|213163276 - gi\|213163276\|ref\|ZP_03348986.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se...	240.0	[0..1]	[295..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILLGYLVV LGTVFGGYLM TGGSLGALYQ PAELVIIAGA GIGSFIVGNN GKAIKGTLKA  60
   61 LPLLFRRSKY TKAMYMDLLA LLYRLMAKSR QM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMFSLERDIE NPRESEIFAS YPRILADSVM LDFIVDYLRL IISGHMNTFE IEALMDEEIE  60
   61 THESEAEVPA NSLALVGDSL PAFGIVAAVM GVVHALGSAD RPAAELGALI AHAMVGTFLG 120
  121 ILLAYGFISP LATVLRQKSA ETSKMMQCVK VTLLSNLNGY APPIAVEFGR KTLYSSERPS 180
  181 FIELEEHVRA VKNPQQQTTT EEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits