YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|133733923, gi...
Organism:	Listeria monocytogenes F6900
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133733923, gi....

Description	E-value	Query Range	Subject Range
gi\|34809639, gi\|... - gi\|34809640\|pdb\|1O57\|D Chain D, Crystal Structure Of The Purine Operon Repressor Of Bacillus Subtili...	234.0	[0..1]	[271..1]
PURR_BACSU - Pur operon repressor OS=Bacillus subtilis GN=purR PE=1 SV=1 gi\|221321374 - gi\|221321374\|ref\|ZP_03602668.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. SMY] gi\|221312178 - gi\|221312178\|ref\|ZP_03593983.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. NCIB... PURR_BACSU - Pur operon repressor OS=Bacillus subtilis (strain 168) GN=purR PE=1 SV=1 gi\|221317111 - gi\|221317111\|ref\|ZP_03598405.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. JH64...	234.0	[0..1]	[271..1]
gi\|89154881, gi\|... - gi\|89207201\|ref\|ZP_01185747.1\| Pur operon repressor [Bacillus weihenstephanensis KBAB4], gi\|89154881...	225.0	[0..1]	[269..1]
gi\|228937349, gi... - gi\|228937349\|ref\|ZP_04099996.1\| Pur operon repressor [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228898800, gi... - gi\|228898800\|ref\|ZP_04063083.1\| Pur operon repressor [Bacillus thuringiensis IBL 4222], gi\|228860825... gi\|228976805, gi... - gi\|228976805\|ref\|ZP_04137218.1\| Pur operon repressor [Bacillus thuringiensis Bt407], gi\|228782901\|gb... gi\|74492899, gi\|... - gi\|75759608\|ref\|ZP_00739694.1\| Pur operon repressor [Bacillus thuringiensis serovar israelensis ATCC... gi\|228970235, gi... - gi\|228970235\|ref\|ZP_04130895.1\| Pur operon repressor [Bacillus thuringiensis serovar thuringiensis s... gi\|218544270, gi... - gi\|218895182\|ref\|YP_002443593.1\| pur operon repressor [Bacillus cereus G9842], gi\|218544270\|gb\|ACK96...	225.0	[0..1]	[269..1]
gi\|42735040, gi\|... - gi\|42779125\|ref\|NP_976372.1\| purine operon repressor [Bacillus cereus ATCC 10987], gi\|42735040\|gb\|AA...	224.0	[0..1]	[269..1]
gi\|52346406, gi\|... - gi\|52783904\|ref\|YP_089733.1\| purine operon repressor [Bacillus licheniformis ATCC 14580], gi\|5234640...	224.0	[0..1]	[269..1]
gi\|29893857, gi\|... - gi\|30018317\|ref\|NP_829948.1\| purine operon repressor [Bacillus cereus ATCC 14579], gi\|29893857\|gb\|AA...	224.0	[0..1]	[269..1]
gi\|21398009, gi\|... - gi\|65317506\|ref\|ZP_00390465.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|30260236, gi\|... - gi\|30260236\|ref\|NP_842613.1\| purine operon repressor [Bacillus anthracis str. Ames], gi\|30253557\|gb\|... gi\|254762411 - gi\|254762411\|ref\|ZP_05214253.1\| pur operon repressor [Bacillus anthracis str. Australia 94] gi\|254756355 - gi\|254756355\|ref\|ZP_05208384.1\| pur operon repressor [Bacillus anthracis str. Vollum] gi\|254744650 - gi\|254744650\|ref\|ZP_05202329.1\| pur operon repressor [Bacillus anthracis str. Kruger B] gi\|254733603 - gi\|254733603\|ref\|ZP_05191322.1\| pur operon repressor [Bacillus anthracis str. Western North America ... gi\|254724187 - gi\|254724187\|ref\|ZP_05185972.1\| pur operon repressor [Bacillus anthracis str. A1055] gi\|254682327 - gi\|254682327\|ref\|ZP_05146188.1\| pur operon repressor [Bacillus anthracis str. CNEVA-9066] gi\|229266284, gi... - gi\|229601876\|ref\|YP_002864697.1\| pur operon repressor [Bacillus anthracis str. A0248], gi\|229266284\|... gi\|227812719, gi... - gi\|227812719\|ref\|YP_002812728.1\| pur operon repressor [Bacillus anthracis str. CDC 684], gi\|22700643... gi\|225790390, gi... - gi\|225862098\|ref\|YP_002747476.1\| pur operon repressor [Bacillus cereus 03BB102], gi\|225790390\|gb\|ACO... gi\|51978639, gi\|... - gi\|52145170\|ref\|YP_081658.1\| purine operon repressor [Bacillus cereus E33L], gi\|51978639\|gb\|AAU20189... gi\|47525299, gi\|... - gi\|47525299\|ref\|YP_016648.1\| purine operon repressor [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|49177007, gi\|... - gi\|49183080\|ref\|YP_026332.1\| purine operon repressor [Bacillus anthracis str. Sterne], gi\|49177007\|g... gi\|167529516, gi... - gi\|167635042\|ref\|ZP_02393359.1\| pur operon repressor [Bacillus anthracis str. A0442], gi\|167529516\|g... gi\|167510529, gi... - gi\|167641544\|ref\|ZP_02399792.1\| pur operon repressor [Bacillus anthracis str. A0193], gi\|167510529\|g... gi\|170667152, gi... - gi\|170688928\|ref\|ZP_02880130.1\| pur operon repressor [Bacillus anthracis str. A0465], gi\|170667152\|g... gi\|170127513, gi... - gi\|170707517\|ref\|ZP_02897970.1\| pur operon repressor [Bacillus anthracis str. A0389], gi\|170127513\|g... gi\|172080167, gi... - gi\|177655326\|ref\|ZP_02936855.1\| pur operon repressor [Bacillus anthracis str. A0174], gi\|172080167\|g... gi\|190569006, gi... - gi\|190569006\|ref\|ZP_03021907.1\| pur operon repressor [Bacillus anthracis Tsiankovskii-I], gi\|1905599... gi\|196036390, gi... - gi\|196036390\|ref\|ZP_03103787.1\| pur operon repressor [Bacillus cereus W], gi\|195991020\|gb\|EDX54991.1... gi\|196041759, gi... - gi\|196041759\|ref\|ZP_03109049.1\| pur operon repressor [Bacillus cereus NVH0597-99], gi\|196027379\|gb\|E... gi\|164711682, gi... - gi\|165872554\|ref\|ZP_02217186.1\| pur operon repressor [Bacillus anthracis str. A0488], gi\|164711682\|g... gi\|196047388, gi... - gi\|196047388\|ref\|ZP_03114601.1\| pur operon repressor [Bacillus cereus 03BB108], gi\|196021790\|gb\|EDX6... gi\|118415042, gi... - gi\|118475817\|ref\|YP_892968.1\| pur operon repressor [Bacillus thuringiensis str. Al Hakam], gi\|118415...	224.0	[0..1]	[269..1]
gi\|218901247, gi... - gi\|218901247\|ref\|YP_002449081.1\| pur operon repressor [Bacillus cereus AH820], gi\|218539021\|gb\|ACK91... gi\|49479993, gi\|... - gi\|49479993\|ref\|YP_034399.1\| purine operon repressor [Bacillus thuringiensis serovar konkukian str. ...	224.0	[0..1]	[269..1]
gi\|16799308 - gi\|16799308\|ref\|NP_469576.1\| purine operon repressor [Listeria innocua Clip11262] gi\|16412650, gi\|... - pir\|\|AH1461 PurR, transcription repressor of purine operon of B. subtilis homolog lin0231 [imported]...	223.0	[0..1]	[271..1]

Back

Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRRSERLI DMTQFLLSHP RKLVPLTMFA ERYGSAKSSI SEDLVIIKKT FEDRGIGTLE  60
   61 TVPGAAGGVQ YISIAGNDDV LDFVHTLCNR IAEPNRLLPG GYLYLSDLLG EPVTLKAIGK 120
  121 ILATKFNNQK IDAIMTVATK GIPIAQAVAE HLSVPFVIVR RDSKVTEGST VSINYVSGSS 180
  181 KRIEKMELSK RSLAEGSNVV IVDDFMKAGG TINGMKNLLE EFNAHLVGIG VLVESEYAEE 240
  241 RLVDDYVSLV KIKNVNMKEK QIEVVDGNYF NS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.69897
Match:	1p4aA
Description:	Crystal Structure of the PurR complexed with cPRPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring glycosyl groups	4.2311942024575	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	4.09335440098877	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	3.54791114034186	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.03016109611914	bayes_pls_golite062009
catalytic activity	2.67475805095976	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	2.54772263155456	bayes_pls_golite062009
transferase activity	2.23444207913717	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.87184614964143	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.7212298503296	bayes_pls_golite062009
diphosphotransferase activity	1.16607700772697	bayes_pls_golite062009
transcription regulator activity	0.638819926590526	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
xanthine phosphoribosyltransferase activity	0.396756152343601	bayes_pls_golite062009
nucleic acid binding	0.365716008829981	bayes_pls_golite062009
adenine binding	0.273534938103602	bayes_pls_golite062009
DNA binding	0.197909920189603	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: