YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157823649, gi...
Organism:	Rattus norvegicus
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157823649, gi....

Description	E-value	Query Range	Subject Range
gi\|114630378, gi... - gi\|114630380\|ref\|XP_001159562.1\| PREDICTED: cellular modulator of immune recognition isoform 6 [Pan ...	250.0	[0..1]	[286..1]
gi\|19263985, gi\|... - gi\|45219887\|gb\|AAH66988.1\| Membrane-associated ring finger (C3HC4) 8 [Homo sapiens], gi\|19263985\|gb\|...	244.0	[0..1]	[286..1]
MARH8_BOVIN - E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2 SV=1	242.0	[0..1]	[286..1]
gi\|109088886, gi... - gi\|109088890\|ref\|XP_001102984.1\| PREDICTED: similar to cellular modulator of immune recognition isof...	239.0	[0..1]	[286..1]
gi\|73997881 - gi\|73997881\|ref\|XP_848387.1\| PREDICTED: similar to cellular modulator of immune recognition isoform ...	236.0	[0..1]	[286..1]
gi\|50749454 - gi\|50749454\|ref\|XP_421642.1\| PREDICTED: similar to Membrane-associated ring finger (C3HC4) 8 [Gallus...	231.0	[0..1]	[286..1]
gi\|109503238, gi... - gi\|209447115\|ref\|NP_001129310.1\| membrane-associated ring finger (C3HC4) 1 [Rattus norvegicus], gi\|1...	231.0	[0..3]	[286..1]
gi\|42734483, gi\|... - gi\|42734483\|ref\|NP_780397.2\| membrane-associated ring finger (C3HC4) 1 [Mus musculus], gi\|41946803\|g...	229.0	[0..3]	[286..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMPLHQISA IPSQDAISAR VYRSKTKDKE QNEKTLGHSM SHPSNISKAG SSPPSTTAPV  60
   61 SAFSRTSVTP SNQDICRICH CEGDDESPLI TPCHCTGSLH FVHQACLQQW IKSSDTRCCE 120
  121 LCKYEFIMET KLKPLRKWEK LQM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.09691
Match:	2d8sA
Description:	No description for 2d8sA was found.

Predicted Domain #2

Region A:
Residues: [144-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASERRKIMC SVTFHVIAIT CVVWSLYVLI DRTAEEIKQG QVTGILEWPF WTKLVVVAIG  60
   61 FTGGLLFMYV QCKVYLQLWK RLKAYNRVIY VQNCPETSKK NIFEKSALTE PTLENKEGHG 120
  121 MCHSTTNSSC TEPEDTGAEI INV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits