Protein: | gi|114595674, gi... |
Organism: | Pan troglodytes |
Length: | 317 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114595674, gi....
Description | E-value | Query Range |
Subject Range |
|
8.0E-47 | [1..317] | [1..317] |
|
2.0E-46 | [1..317] | [1..317] |
|
3.0E-46 | [1..317] | [1..317] |
|
3.0E-46 | [1..317] | [1..317] |
|
3.0E-44 | [1..317] | [1..316] |
|
4.0E-40 | [62..317] | [16..271] |
|
1.0E-39 | [62..317] | [16..271] |
Region A: Residues: [1-82] |
1 11 21 31 41 51 | | | | | | 1 METNCRKLVS ACVQLGVQPA AVECLFSKDS EIKKVEFTDS PESRKEAASS KFFPRQHPGA 60 61 NEKDKSQQGK NEDVGAEDPS KK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [83-157] |
1 11 21 31 41 51 | | | | | | 1 KRQRRQRTHF TSQQLQELEA TFQRNRYPDM STREEIAVWT NLTEARVRVW FKNRRAKWRK 60 61 RERNQQAELC KNGFG |
Detection Method: | |
Confidence: | 18.0 |
Match: | 1yz8P |
Description: | Solution structure of the k50 class homeodomain pitx2 bound to dna and implications for mutations that cause rieger syndrome |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
binding | 3.02779747447702 | bayes_pls_golite062009 |
transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
protein binding | 1.88087411289001 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
Region A: Residues: [158-317] |
1 11 21 31 41 51 | | | | | | 1 PQFNGLMQPY DDMYPGYSYN NWAAKGLTSA SLSTKSFPFF NSMNVNPLSS QSMFSPPNSI 60 61 SSMSMSSSMV PSAVTGVPGS SLNSLNNLNN LSSPSLNSAV PTPACPYAPP TPPYVYRDTC 120 121 NSSLASLRLK AKQHSSFGYA SVQNPASNLS ACQYAVDRPV |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.