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View Structure Prediction Details

Protein: gi|208965290, gi...
Organism: synthetic construct
Length: 331 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208965290, gi....

Description E-value Query
Range
Subject
Range
gi|12052969 - gi|12052969|emb|CAB66659.1| hypothetical protein [Homo sapiens]
0.0 [1..331] [1..331]
gi|114554954 - gi|114554954|ref|XP_001146207.1| PREDICTED: nuclear distribution gene C homolog (A. nidulans) isofor...
0.0 [1..331] [1..332]
NUDC_BOVIN - Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1
0.0 [1..331] [1..332]
gi|73950139 - gi|73950139|ref|XP_544475.2| PREDICTED: similar to nuclear distribution gene C homolog (A. nidulans)...
0.0 [1..331] [1..332]
NUDC_RAT - Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1
0.0 [1..331] [1..332]
NUDC_MOUSE - Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1
gi|53734345 - gb|AAH84045.1| Unknown (protein for MGC:98405) [Xenopus laevis]
0.0 [1..331] [1..332]
gi|8101760 - gi|8101760|gb|AAF72649.1|AF259800_1 putative nuclear movement protein PNUDC [Pleurodeles waltl]
2.0E-91 [7..331] [5..346]
gi|182891356, gi... - gi|41055498|ref|NP_957213.1| nuclear distribution gene C homolog [Danio rerio], gi|28279157|gb|AAH45...
6.0E-89 [5..331] [3..333]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGEQEEERF DGMLLAMAQQ HEGGVQELVN TFFSFLRRKT DFFIGGEEGM AEKLITQTFS  60
   61 HHNQLAQKTR REKRARQEAE RREKAERAAR LAKEAKSETS GPQIKELTDE EAERLQLEID 120
  121 QKKDAENHEA QLKNGSLDSP GKQDTEEDEE E

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [152-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKDKGKLKP NLGNGADLPN YRWTQTLSEL DLAVPFCVNF RLKGKDMVVD IQRRHLRVGL  60
   61 KGQPAIIDGE LYNEVKVEES SWLIEDGKVV TVHLEKINKM EWWSRLVSSD PEINTKKINP 120
  121 ENS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1wfiA
Description: Nuclear move domain of nuclear distribution gene C homolog
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.7774714353448 bayes_pls_golite062009
protein binding 0.643437066451821 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [275-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLSDLDSETR SMVEKMMYDQ RQKSMGLPTS DEQKKQEILK KFMDQHPEMD FSKAKFN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle