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View Structure Prediction Details

Protein: DAPB_PSEAB
Organism: Pseudomonas aeruginosa UCBPP-PA14
Length: 268 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPB_PSEAB.

Description E-value Query
Range		 Subject
Range
DAPB_PSEU5 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas stutzeri (strain A1501) GN=dapB PE=3 SV=1
gi|33578042 - gi|33578042|gb|AAQ22348.1| dihydrodipicolinate reductase [Pseudomonas stutzeri A15]
 2.0E-94 [1..267] [1..267]
DAPB_PSEE4 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas entomophila (strain L48) GN=dapB PE=3 SV=1
gi|95109001 - gi|95109001|emb|CAK13697.1| dihydrodipicolinate reductase [Pseudomonas entomophila L48]
 3.0E-94 [1..268] [1..267]
DAPB_PSEPK - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain KT2440) GN=dapB PE=3 SV=1
 3.0E-94 [1..268] [1..267]
tr|I7AV70|I7AV70... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain DOT-T1E) GN=dapB PE=3 SV=1
tr|E4R634|E4R634... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain BIRD-1) GN=dapB PE=3 SV=1
DAPB_PSEP1 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dapB P...
 2.0E-93 [1..268] [1..267]
gi|213928510, gi... - gi|213966660|ref|ZP_03394811.1| dihydrodipicolinate reductase [Pseudomonas syringae pv. tomato T1], ...
DAPB_PSESM - Dihydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato GN=dapB PE=3 SV=1
DAPB_PSESM - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dap...
 2.0E-93 [1..267] [1..266]
DAPB_PSEU2 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=da...
 3.0E-93 [1..267] [1..266]
DAPB_PSEAJ - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas amygdali pv. tabaci GN=dapB PE=3 SV=1
 9.0E-93 [1..267] [1..266]
DAPB_PSEF5 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) G...
 1.0E-92 [1..268] [1..268]
DAPB_PSE14 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A ...
 1.0E-92 [1..267] [1..266]
DAPB_PELCD - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) G...
 2.0E-92 [1..268] [1..267]

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Predicted Domain #1
Region A:
Residues: [1-268] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRIAVVGAA GRMGKNLIEA VQQTGGAAGL TAAVDRPDST LVGADAGELA GLGRIGVPLS  60
   61 GDLGKVCEEF DVLIDFTHPS VTLKNIEQCR KARRAMVIGT TGFSADEKLL LAEAAKDIPI 120
  121 VFAANFSVGV NLCLKLLDTA ARVLGDEVDI EIIEAHHRHK VDAPSGTALR MGEVVAQALG 180
  181 RDLQEVAVYG REGQTGARAR ETIGFATVRA GDVVGDHTVL FAAEGERVEI THKASSRMTF 240
  241 ARGAVRAALW LEGKENGLYD MQDVLGLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.045757
Match: 1arzA
Description: Dihydrodipicolinate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 2.60548927745815 bayes_pls_golite062009
catalytic activity 2.54843319568228 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.54909195188343 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 0.841370849960815 bayes_pls_golite062009
saccharopine dehydrogenase activity 0.495113665163626 bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity 0.0651785123513661 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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