YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124000217, gi...
Organism:	synthetic construct
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000217, gi....

Description	E-value	Query Range	Subject Range
NDUB8_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pan troglodytes GN=NDU...	8.0E-80	[1..186]	[1..186]
gi\|4689104 - gi\|4689104\|gb\|AAD27761.1\|AF077028_1 NADH-ubiquinone oxidoreductase ASHI subunit precursor [Homo sapi...	2.0E-79	[1..186]	[1..186]
NDUB8_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Bos taurus GN=NDUFB8 P...	4.0E-79	[1..186]	[1..186]
NDUB8_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Gorilla gorilla gorill... gi\|111662041 - gi\|111662041\|gb\|ABH12197.1\| mitochondrial complex I subunit NDUFB8 [Gorilla gorilla]	7.0E-79	[1..186]	[1..186]
NDUB8_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial precursor - Pongo pygmaeu... NDUB8_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pongo abelii GN=NDUFB8...	8.0E-79	[1..186]	[1..186]
gi\|57107249 - gi\|57107249\|ref\|XP_534992.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	3.0E-78	[1..186]	[1..186]
gi\|109090264 - gi\|109090264\|ref\|XP_001108340.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	4.0E-78	[1..186]	[1..186]
gi\|187469737, gi... - gi\|62642368\|ref\|XP_215269.3\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	4.0E-78	[1..186]	[1..186]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVARAGVLG VQWLQRASRN VMPLGARTAS HMTKDMFPGP YPRTPEERAA AAKKYNMRVE  60
   61 DYEPYPDDGM GYGDYPKLPD RSQHERDPWY SWDQPGLRLN WGEPMHWHLD MYNRNRVDTS 120
  121 PTPVSWHVMC MQLFGFLAFM IFMCWVGDVY PVYQPVGPKQ YPYNNLYLER GGDPSKEPER 180
  181 VVHYEI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	144.187087
Match:	PF05821.2
Description:	No description for PF05821.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits