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View Structure Prediction Details

Protein: gi|125527825
Organism: Oryza sativa Indica Group
Length: 614 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125527825.

Description E-value Query
Range
Subject
Range
GH38_ORYSA - Probable indole-3-acetic acid-amido synthetase GH3.8 (EC 6.3.2.-) (Auxin-responsive GH3-like protein...
GH38_ORYSJ - Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 S...
GH38_ORYSI - Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=...
836.0 [0..5] [614..2]

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Predicted Domain #1
Region A:
Residues: [1-614]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAAVAAAE AGSKAAAVAG KAVAACERDA EKLEFIEEMT RGFDAVQERV LAAILARNNG  60
   61 AEYLRRHGME GRTDREAFKA RVPVVTYEDL RPEIERIANG DRSNIISSHP ITEFLTSSGT 120
  121 SAGERKLMPT IEDELDRRQM LYSLLMPVMN LYVPGLDKGK GLYFLFIKSE TKTPGGLPAR 180
  181 PVLTSYYKSD HFKHRPFDPY NVYTSPTAAI LCTDAFQSMY AQMLCGLVAR AEVLRVGAVF 240
  241 ASGLLRAIRF LQLHWRELAH DIRTGTLSAK VTEPSIRDAV AEVLAAPDAE LAAFVEAECG 300
  301 KDKWEGIITR MWPNTKYLDV IVTGAMAQYI PTLKFYSGGL PMACTMYASS ECYFGLNLRP 360
  361 MCDPSEVSYT IMPNMGYFEL MPHDPDAPPL PRDAPPPRLV DLADAEVGRE YELVITTYAG 420
  421 LCRYRVGDIL QVTGFHNAAP QFRFVRRKNV LLSIDSDKTD EAELQAAVER ASALLSPYGA 480
  481 SIVEYTSQAD ATTIPGHYVV YWELMVREGG AWPPPAEEEG RGVFERCCLE MEEALNAVYR 540
  541 QGRNGEAIGP LEIRVVRAGT FEEVMDYAIS RGASINQYKA PRCVSFGPII ELLNSRVISK 600
  601 HFSPACPKYS PHKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.97
Match: 1ry2A
Description: Crystal structure of yeast acetyl-coenzyme A synthetase in complex with AMP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.927181813624701 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle