YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117623000, gi...
Organism:	Escherichia coli APEC O1
Length:	530 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117623000, gi....

Description	E-value	Query Range	Subject Range
gi\|51595845, gi\|... - gi\|51595845\|ref\|YP_070036.1\| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP 329... Q66C98\|Q66C98_YERPS - ABC transporter ATP-binding protein - Yersinia pseudotuberculosis	504.0	[0..1]	[530..57]
gi\|30062303, gi\|... - gi\|30062303\|ref\|NP_836474.1\| putative ATP-binding component of a transport system [Shigella flexneri... gi\|24112187, gi\|... - gi\|24112187\|ref\|NP_706697.1\| putative ATP-binding component of a transport system [Shigella flexneri... gi\|110804819, gi... - gi\|110804819\|ref\|YP_688339.1\| putative ATP-binding component of a transport system [Shigella flexner...	504.0	[0..1]	[530..1]
gi\|187731307, gi... - gi\|187731307\|ref\|YP_001880992.1\| ABC transporter, ATP-binding protein [Shigella boydii CDC 3083-94],... gi\|81244676, gi\|... - gi\|82543265\|ref\|YP_407212.1\| putative ATP-binding component of a transport system [Shigella boydii S...	503.0	[0..1]	[530..1]
gi\|108812648, gi... - gi\|108812648\|ref\|YP_648415.1\| ABC transporter ATP-binding protein [Yersinia pestis Nepal516], gi\|108... gi\|166207432, gi... - gi\|166211661\|ref\|ZP_02237696.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|22126556, gi\|... - gi\|22126556\|ref\|NP_669979.1\| ABC transporter ATP-binding protein [Yersinia pestis KIM], gi\|21959559\|... gi\|108806784, gi... - gi\|108806784\|ref\|YP_650700.1\| ABC transporter ATP-binding protein [Yersinia pestis Antiqua], gi\|1087... gi\|167421800, gi... - gi\|167421800\|ref\|ZP_02313553.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|45436066, gi\|... - gi\|45441206\|ref\|NP_992745.1\| ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus st... gi\|165939634, gi... - gi\|165939634\|ref\|ZP_02228178.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|166012112, gi... - gi\|166012112\|ref\|ZP_02233010.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|162419791, gi... - gi\|162419791\|ref\|YP_001607368.1\| ABC transporter ATP-binding protein [Yersinia pestis Angola], gi\|16... gi\|165923540, gi... - gi\|165924480\|ref\|ZP_02220312.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|145598768, gi... - gi\|145598768\|ref\|YP_001162844.1\| ABC transporter ATP-binding protein [Yersinia pestis Pestoides F], ... gi\|167057191, gi... - gi\|167424342\|ref\|ZP_02316095.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaev...	502.0	[0..1]	[529..57]
gi\|229689190, gi... - gi\|229843582\|ref\|ZP_04463725.1\| putative ABC transporter with two ATP-binding domains [Yersinia pest... gi\|229703712, gi... - gi\|229894314\|ref\|ZP_04509497.1\| putative ABC transporter with two ATP-binding domains [Yersinia pest... gi\|167050218, gi... - gi\|167400269\|ref\|ZP_02305782.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|229697836, gi... - gi\|229841470\|ref\|ZP_04461629.1\| putative ABC transporter with two ATP-binding domains [Yersinia pest... gi\|229903045, gi... - gi\|229903045\|ref\|ZP_04518161.1\| putative ABC transporter with two ATP-binding domains [Yersinia pest... gi\|149290913, gi... - gi\|149366539\|ref\|ZP_01888573.1\| ABC transporter ATP-binding protein [Yersinia pestis CA88-4125], gi\|... gi\|25384361 - pir\|\|AG0181 ABC transporter ATP-binding protein YPO1491 [imported] - Yersinia pestis (strain CO92) gi\|115347243, gi... - gi\|218928632\|ref\|YP_002346507.1\| ABC transporter ATP-binding protein [Yersinia pestis CO92], gi\|1612...	501.0	[0..1]	[529..1]
gi\|73854839, gi\|... - gi\|74311362\|ref\|YP_309781.1\| putative ATP-binding component of a transport system [Shigella sonnei S...	499.0	[0..1]	[530..1]
gi\|68547280, gi\|... - gi\|68547280\|ref\|ZP_00586819.1\| ABC transporter [Shewanella amazonensis SB2B], gi\|68515055\|gb\|EAN3877...	498.0	[0..1]	[530..1]
gi\|161614905, gi... - gi\|161614905\|ref\|YP_001588870.1\| hypothetical protein SPAB_02659 [Salmonella enterica subsp. enteric... gi\|29138101, gi\|... - gi\|29142470\|ref\|NP_805812.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric... gi\|205359777, gi... - gi\|205359777\|ref\|ZP_02832006.2\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente... gi\|16759757 - gi\|16759757\|ref\|NP_455374.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric... gi\|204929952, gi... - gi\|204929952\|ref\|ZP_03220973.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente... gi\|194450745, gi... - gi\|194450745\|ref\|YP_002044869.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent... gi\|25384376, gi\|... - gi\|25384376\|pir\|\|AD0602 ABC transporter ATP-binding protein ybiT [imported] - Salmonella enterica su... gi\|168240712, gi... - gi\|205340051\|gb\|EDZ26815.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica... gi\|214000405 - gi\|214000405\|ref\|ZP_03411140.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente... gi\|213051894 - gi\|213051894\|ref\|ZP_03344772.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...	497.0	[0..1]	[530..1]
gi\|62127038, gi\|... - gi\|62179405\|ref\|YP_215822.1\| ABC transporter ATPase [Salmonella enterica subsp. enterica serovar Cho... gi\|224467178, gi... - gi\|224582651\|ref\|YP_002636449.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent...	497.0	[0..1]	[530..1]
lcl\|NC_016856.1_... - [gene=ybiT] [protein=putative ABC transporter ATPase component] [protein_id=YP_005236571.1] [locatio... gi\|205347671, gi... - gi\|205360674\|ref\|ZP_02685626.2\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|206708077, gi... - gi\|207856274\|ref\|YP_002242925.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent... gi\|205352093, gi... - gi\|205352093\|ref\|YP_002225894.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent... gi\|205357759, gi... - gi\|205357759\|ref\|ZP_02573178.2\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|197212230, gi... - gi\|197248527\|ref\|YP_002145797.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en... gi\|16764200, gi\|... - gi\|16764200\|ref\|NP_459815.1\| putative ABC transporter ATPase component [Salmonella typhimurium LT2],... gi\|197262584, gi... - gi\|197262584\|ref\|ZP_03162658.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|194454901, gi... - gi\|194468537\|ref\|ZP_03074521.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|195631057, gi... - gi\|195874068\|ref\|ZP_02700307.2\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|168230746, gi... - gi\|205334699\|gb\|EDZ21463.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|194404671, gi... - gi\|194446008\|ref\|YP_002040077.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en... gi\|238913905 - gi\|238913905\|ref\|ZP_04657742.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...	497.0	[0..1]	[530..1]

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Predicted Domain #1

Region A:
Residues: [1-530]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSSNVTMQ FGSKPLFENI SVKFGGGNRY GLIGANGSGK STFMKILGGD LEPTLGNVSL  60
   61 DPNERIGKLR QDQFAFEEFT VLDTVIMGHK ELWEVKQERD RIYALPEMSE EDGYKVADLE 120
  121 VKYGEMDGYS AEARAGELLL GVGIPVEQHY GPMSEVAPGW KLRVLLAQAL FADPDILLLD 180
  181 EPTNNLDIDT IRWLEQVLNE RDSTMIIISH DRHFLNMVCT HMADLDYGEL RVYPGNYDEY 240
  241 MTAATQARER LLADNAKKKA QIAELQSFVS RFSANASKSR QATSRARQID KIKLEEVKAS 300
  301 SRQNPFIRFE QDKKLFRNAL EVEGLTKGFD NGPLFKNLNL LLEVGEKLAV LGTNGVGKST 360
  361 LLKTLVGDLQ PDSGTVKWSE NARIGYYAQD HEYEFENDLT VFEWMSQWKQ EGDDEQAVRS 420
  421 ILGRLLFSQD DIKKPAKVLS GGEKGRMLFG KLMMQKPNIL IMDEPTNHLD MESIESLNMA 480
  481 LELYQGTLIF VSHDREFVSS LATRILEITP ERVIDFSGNY EDYLRSKGIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits