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View Structure Prediction Details

Protein: NDUB3_GORGO
Organism: Gorilla gorilla gorilla
Length: 98 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB3_GORGO.

Description E-value Query
Range
Subject
Range
NDUB3_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Bos taurus GN=NDUFB3 PE=1 SV=2
1.0E-42 [1..98] [1..98]
NDUB3_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Mus musculus GN=Ndufb3 PE=1 SV=1
3.0E-40 [13..98] [19..104]
NDUB3_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo pygmaeus GN=NDUFB3 PE=3 SV=3
NDUB3_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo abelii GN=NDUFB3 PE=3 SV=3
4.0E-39 [7..98] [3..94]
gi|109100553, gi... - gi|109102863|ref|XP_001113376.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...
6.0E-38 [13..98] [13..98]
gi|149046091, gi... - gi|27683843|ref|XP_217400.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...
1.0E-37 [13..98] [15..99]
gi|57110931 - gi|57110931|ref|XP_536029.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...
5.0E-37 [12..98] [12..98]
gi|134254255, gi... - gi|89269513|emb|CAJ83361.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 [Xenopus tropicalis...
4.0E-36 [1..98] [1..97]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHEHGHEHG HHKMELPDYR QWKIEGTPLE TIQKKLAAKG LRDPWGRNEA WRYMGGFAKS  60
   61 VSFSDVFFKG FKWGFAAFVV AVGAEYYLES LNKDKKHH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.455932
Match: PF08122.3
Description: No description for PF08122.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.722 N/A N/A a.4.1 Homeodomain-like
View Download 0.720 N/A N/A a.4.1 Homeodomain-like
View Download 0.672 N/A N/A a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain
View Download 0.621 N/A N/A a.4.1 Homeodomain-like
View Download 0.605 N/A N/A a.56.1 CO dehydrogenase ISP C-domain like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle