YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125562256
Organism:	Oryza sativa Indica Group
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125562256.

Description	E-value	Query Range	Subject Range
gi\|218189593 - gi\|218189593\|gb\|EEC72020.1\| hypothetical protein OsI_04900 [Oryza sativa Indica Group] gi\|56784933, gi\|... - gi\|56784933\|dbj\|BAD82391.1\| unknown protein [Oryza sativa Japonica Group], gi\|222619746\|gb\|EEE55878....	113.0	[0..85]	[133..74]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEPGTNKL KMLLYFLLLI VATLVITAEV GVVLAAAARV LSPSTTEEVP VVTSVRLPAQ  60
   61 TEISSSSEGE ARGGGSSRAS AAAAARRMAI GSRAPTCTYN ECRGCRRRCS VQEVPVDAGD 120
  121 PMNSAYHYRC ICHL

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits