YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|125541384, gi...
Organism: Oryza sativa Indica Group
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125541384, gi....

Description E-value Query
Range		 Subject
Range
gi|73981961 - gi|73981961|ref|XP_533103.2| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit, ATPa...
 396.0 [0..4] [426..484]

Back

Predicted Domain #1
Region A:
Residues: [1-426] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPEPEDDIM NEKNPRPLDE DDIALLKTYG LGPYSTSIKK VEKEIKEMAK KINDLCGIKE  60
   61 SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTD DAKYVINVKQ IAKFVVGLGD 120
  121 KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM 180
  181 REVVELPMLH PEKFVKLGID PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ 240
  241 KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD 300
  301 GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD 360
  361 IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK DFLDAVNKVI KGYQKFSATP 420
  421 KYMVYN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.522879
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.71605970197038 bayes_pls_golite062009
peptidase activity 3.6994352506738 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 3.52737232558306 bayes_pls_golite062009
endopeptidase activity 3.48761031707503 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 2.97654163768625 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.82708337557815 bayes_pls_golite062009
ion transmembrane transporter activity 2.73258998901465 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 2.62447832211895 bayes_pls_golite062009
motor activity 2.60481158518321 bayes_pls_golite062009
transporter activity 2.58140740499725 bayes_pls_golite062009
cation transmembrane transporter activity 2.55141814687566 bayes_pls_golite062009
microtubule motor activity 2.4749473285311 bayes_pls_golite062009
transmembrane transporter activity 2.39695871109024 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.34560197109168 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.93945622138684 bayes_pls_golite062009
metal ion transmembrane transporter activity 1.63387464349089 bayes_pls_golite062009
cytoskeletal protein binding 1.50574672650697 bayes_pls_golite062009
voltage-gated cation channel activity 1.40218617756729 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
microfilament motor activity 1.28029120876672 bayes_pls_golite062009
potassium channel activity 1.25325326058348 bayes_pls_golite062009
voltage-gated channel activity 1.23813846876459 bayes_pls_golite062009
voltage-gated ion channel activity 1.2328838184594 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
nucleic acid binding 0.901460716954519 bayes_pls_golite062009
actin binding 0.875514430441177 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 0.638370793401149 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.600852003734846 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 0.540220352687624 bayes_pls_golite062009
protein transporter activity 0.498432226280822 bayes_pls_golite062009
DNA binding 0.479412476059825 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
transcription regulator activity 0.312171320541728 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
tubulin binding 0.264882086048416 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
structural constituent of ribosome 0.208665086324262 bayes_pls_golite062009
cation channel activity 0.192467810264152 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
microtubule binding 0.156470772916507 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle