YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|133752761
Organism:	Influenza A virus (A/Memphis/39/1983(H1N1))
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133752761.

Description	E-value	Query Range	Subject Range
gi\|324027\|gb\|AAA... - nonstructural protein NS [Influenza A virus (A/FPV/Rostock/1934(H7N1))] gi\|324027 - gi\|324027\|gb\|AAA43115.1\| nonstructural protein NS [Influenza A virus (A/FPV/Rostock/1934(H7N1))] gi\|324027 - gi\|324027\|gb\|AAA43115.1\| nonstructural protein NS	221.0	[0..8]	[121..165]
gi\|37926616 - gi\|37926616\|gb\|AAO46576.1\| non-structural protein NS2 [Influenza A virus (A/ElSalvador/2/57(H2N2))] gi\|37926616 - gi\|37926616\|gb\|AAO46576.1\| non-structural protein NS2 [Influenza A virus (A/ElSalvador/2/57(H2N2))]	220.0	[0..1]	[121..1]
gi\|125976172 - gi\|125976172\|gb\|ABN59407.1\| nonstructural protein 2 [Influenza A virus (A/Albany/4835/1948(H1N1))] gi\|158344920 - gi\|158344920\|gb\|ABW36317.1\| nonstructural protein 2 [Influenza A virus (A/Albany/8/1979(H1N1))] gi\|125663548 - gi\|125663548\|gb\|ABN50762.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/1/1979(H1N1))] gi\|125976229 - gi\|125976229\|gb\|ABN59440.1\| nonstructural protein 2 [Influenza A virus (A/Roma/1949(H1N1))] gi\|125976210 - gi\|125976210\|gb\|ABN59429.1\| nonstructural protein 2 [Influenza A virus (A/Arizona/14/1978(H1N1))] gi\|131059304 - gi\|131059304\|gb\|ABO32998.1\| nonstructural protein 2 [Influenza A virus (A/Lackland/7/1978(H1N1))] gi\|324840, gi\|75165 - gi\|75165\|pir\|\|MNIV2A nonstructural protein NS2 - influenza A virus (strain A/ USSR/90/77 [H1N1]), gi... gi\|131059066 - gi\|131059066\|gb\|ABO32987.1\| nonstructural protein 2 [Influenza A virus (A/Lackland/3/1978(H1N1))] NEP_I77AA - Nuclear export protein OS=Influenza A virus (strain A/Brazil/11/1978 H1N1) GN=NS PE=3 SV=1 gi\|89112442 - gi\|89112442\|gb\|ABD60939.1\| nonstructural protein 2 [Influenza A virus (A/USSR/92/77(H1N1))] NEP_I77AB - Nuclear export protein OS=Influenza A virus (strain A/USSR/90/1977 H1N1) GN=NS PE=3 SV=1 gi\|94959828 - gi\|94959828\|gb\|ABF47732.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/15/1978(H1N1))] gi\|94959847 - gi\|94959847\|gb\|ABF47743.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/17/1978(H1N1))] gi\|146133763 - gi\|146133763\|gb\|ABQ01328.1\| nonstructural protein 2 [Influenza A virus (A/USSR/46/1979(H1N1))] gi\|145279029 - gi\|145279029\|gb\|ABP49454.1\| nonstructural protein 2 [Influenza A virus (A/Albany/20/1978(H1N1))] NEP_IAUSS, VNS2_... - (P03504) Nonstructural protein NS2, (P03504) Nuclear export protein (NEP) (Non structural protein 2)... gi\|145278839 - gi\|145278839\|gb\|ABP49344.1\| nonstructural protein 2 [Influenza A virus (A/California/10/1978(H1N1))] gi\|109159439 - gi\|109159439\|gb\|ABG26819.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/1/1978(H1N1))] gi\|145278801 - gi\|145278801\|gb\|ABP49322.1\| nonstructural protein 2 [Influenza A virus (A/Albany/4836/1950(H1N1))] gi\|94959771 - gi\|94959771\|gb\|ABF47699.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/10/1978(H1N1))] gi\|94959790 - gi\|94959790\|gb\|ABF47710.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/11/1978(H1N1))] gi\|118313017 - gi\|118313017\|gb\|ABK79954.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/20/1978(H1N1))] gi\|94959809 - gi\|94959809\|gb\|ABF47721.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/13/1978(H1N1))]	220.0	[0..1]	[121..1]
gi\|148897961 - gi\|148897961\|gb\|ABR15814.1\| nonstructural protein 2 [Influenza A virus (A/Albany/13/1951(H1N1))] gi\|146760095 - gi\|146760095\|gb\|ABQ44477.1\| nonstructural protein 2 [Influenza A virus (A/Albany/14/1951(H1N1))] gi\|146133744 - gi\|146133744\|gb\|ABQ01317.1\| nonstructural protein 2 [Influenza A virus (A/Albany/1618/1951(H1N1))] NEP_I51A0 - Nuclear export protein OS=Influenza A virus (strain A/USA:Albany/12/1951 H1N1) GN=NS PE=3 SV=1 gi\|89114306 - gi\|89114306\|gb\|ABD61741.1\| nonstructural protein 2 [Influenza A virus (A/Fort Worth/50(H1N1))] gi\|89782564 - gi\|89782564\|gb\|ABD77824.1\| nonstructural protein 2 [Influenza A virus (A/Baylor/11735/82(H1N1))] gi\|90572592 - gi\|90572592\|gb\|ABD95345.1\| nonstructural protein 2 [Influenza A virus (A/Baylor/11515/82(H1N1))] NEP_I57A0 - Nuclear export protein OS=Influenza A virus (strain A/Japan/305/1957 H2N2) GN=NS PE=3 SV=1 gi\|188504360 - gi\|188504360\|gb\|ACD56297.1\| nonstructural protein 2 [Influenza A virus (A/Ann Arbor/23/1957(H2N2))] gi\|86793308 - gi\|86793308\|gb\|ABD15265.1\| nonstructural protein 2 [Influenza A virus (A/Denver/57(H1N1))] gi\|89112499 - gi\|89112499\|gb\|ABD60972.1\| nonstructural protein 2 [Influenza A virus (A/Malaysia/54(H1N1))] NEP_I60A0 - Nuclear export protein OS=Influenza A virus (strain A/Ann Arbor/6/1960 H2N2) GN=NS PE=3 SV=1 gi\|37926610 - gi\|37926610\|gb\|AAO46572.1\| non-structural protein NS2 [Influenza A virus (A/Davis/1/57(H2N2))] NEP_I57A1 - Nuclear export protein OS=Influenza A virus (strain A/Leningrad/134/1957 H2N2) GN=NS PE=3 SV=1 gi\|37926619 - gi\|37926619\|gb\|AAO46578.1\| non-structural protein NS2 [Influenza A virus (A/Malaya/16/58(H2N2))] gi\|94959866 - gi\|94959866\|gb\|ABF47754.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/7/1980(H1N1))] NEP_I57A0 - Nuclear export protein OS=Influenza A virus (strain A/Japan/305/1957 H2N2) GN=NS PE=3 SV=1 gi\|324861, gi\|32... - gi\|75164\|pir\|\|MNIV62 nonstructural protein NS2 - influenza A virus (strain A/Ann Arbor/6/60 [H2N2]),... gi\|145279010 - gi\|145279010\|gb\|ABP49443.1\| nonstructural protein 2 [Influenza A virus (A/Albany/24/1958(H2N2))] gi\|125663838 - gi\|125663838\|gb\|ABN50906.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/49/1983(H1N1))] NEP_I54A2 - Nuclear export protein OS=Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1) GN=NS PE=3 SV=1 gi\|134047456 - gi\|134047456\|gb\|ABO52264.1\| nonstructural protein 2 [Influenza A virus (A/Baylor/4052/1981(H1N1))] gi\|86793308 - gi\|86793308\|gb\|ABD15265.1\| nonstructural protein 2 [Influenza A virus (A/Denver/57(H1N1))] gi\|63054918 - gi\|63054918\|gb\|AAY28996.1\| non-structural protein NS2 [Influenza A virus (A/Canada/720/05(H2N2))] NEP_IALE1 - Nuclear export protein (NEP) (Non-structural protein 2) (NS2) - Influenza A virus (strain A/Leningra... NEP_I60A0, NEP_I... - (P21432) Nonstructural protein NS2, Nuclear export protein - Influenza A virus (strain A/Ann Arbor/6...	220.0	[0..1]	[121..1]
NEP_I45A0 - Nuclear export protein OS=Influenza A virus (strain A/USA:Huston/AA/1945 H1N1) GN=NS PE=3 SV=1 gi\|89152224 - gi\|89152224\|gb\|ABD62848.1\| nonstructural protein 2 [Influenza A virus (A/Bel/1942(H1N1))] gi\|133752892 - gi\|133752892\|gb\|ABO38060.1\| nonstructural protein 2 [Influenza A virus (A/AA/Marton/1943(H1N1))] NEP_I43A0 - Nuclear export protein OS=Influenza A virus (strain A/USA:Iowa/1943 H1N1) GN=NS PE=3 SV=1 gi\|89152224\|gb\|A... - nonstructural protein 2 [Influenza A virus (A/Bel/42(H1N1))]	219.0	[0..1]	[121..1]
gi\|324760 - gi\|324760\|gb\|AAA43494.1\| nonstructural protein 2 [Influenza A virus (A/swine/1976/1931(H1N1))] gi\|324760 - gi\|324760\|gb\|AAA43494.1\| nonstructural protein 2	219.0	[0..1]	[121..1]
NEP_IAWIL - (Q89733) Nuclear export protein (NEP) (Non structural protein 2) (NS2) gi\|541609 - gi\|541609\|gb\|AAA21583.1\| non-structural protein 2 [Influenza A virus (A/WS/1933(H1N1))] gi\|541606 - gi\|541606\|gb\|AAA21581.1\| non-structural protein 2 [Influenza A virus (A/WSN/1940(H1N1))] gi\|94960381 - gi\|94960381\|gb\|ABF47961.1\| nonstructural protein 2 [Influenza A virus (A/WSN/1933 TS61(H1N1))] NEP_I33A0 - Nuclear export protein OS=Influenza A virus (strain A/Wilson-Smith/1933 H1N1) GN=NS PE=1 SV=1 gi\|194352381 - gi\|194352381\|gb\|ACF54604.1\| nuclear export protein [Influenza A virus (A/WSN/1933(H1N1))] gi\|541606, gi\|541609 - gi\|541609\|gb\|AAA21583.1\| non-structural protein 2, gi\|541606\|gb\|AAA21581.1\| non-structural protein 2	219.0	[0..1]	[121..1]
gi\|324590, gi\|324593 - gi\|324593\|gb\|AAA19202.1\| nonstructural protein 2, gi\|324590\|gb\|AAA19200.1\| nonstructural protein 2 NEP_I57A2 - Nuclear export protein OS=Influenza A virus (strain A/Leningrad/134/17/1957 H2N2) GN=NS PE=3 SV=1 NEP_IALE2, VNS2_... - (P26133) Nonstructural protein NS2, (P69266) Nuclear export protein (NEP) (Non structural protein 2)... NEP_I57A3 - Nuclear export protein OS=Influenza A virus (strain A/Leningrad/134/47/1957 H2N2) GN=NS PE=3 SV=1 NEP_IALE3 - Nuclear export protein (NEP) (Non-structural protein 2) (NS2) - Influenza A virus (strain A/Leningra...	219.0	[0..1]	[121..1]
gi\|37926628 - gi\|37926628\|gb\|AAO46584.1\| non-structural protein NS2 [Influenza A virus (A/SaoPaolo/3/59(H2N2))] gi\|37926625 - gi\|37926625\|gb\|AAO46582.1\| non-structural protein NS2 [Influenza A virus (A/Victoria/15681/59(H2N2))... gi\|133982561 - gi\|133982561\|gb\|ABO44096.1\| nonstructural protein 2 [Influenza A virus (A/Albany/1/1959(H2N2))] gi\|146133820 - gi\|146133820\|gb\|ABQ01361.1\| nonstructural protein 2 [Influenza A virus (A/Albany/1/1960(H2N2))] gi\|37926628 - gi\|37926628\|gb\|AAO46584.1\| non-structural protein NS2 [Influenza A virus (A/SaoPaolo/3/59(H2N2))]	219.0	[0..1]	[121..1]
NEP_I80AA - Nuclear export protein OS=Influenza A virus (strain A/India/6263/1980 H1N1) GN=NS PE=3 SV=1 gi\|133753667 - gi\|133753667\|gb\|ABO38313.1\| nonstructural protein 2 [Influenza A virus (A/Albany/26/1957(H2N2))] gi\|134047533 - gi\|134047533\|gb\|ABO52308.1\| nonstructural protein 2 [Influenza A virus (A/Albany/3/1958(H2N2))] gi\|37926622 - gi\|37926622\|gb\|AAO46580.1\| non-structural protein NS2 [Influenza A virus (A/Albany/6/58(H2N2))]	219.0	[0..1]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNTVSSFQ DILMRMSKMQ LGSSSGDLNG MITQFESLKL YRDSLGEAVM RMGD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [55-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHSLQNRNGK WREQLGQKFE EIRWLIEEVR HKLKITENSF EQITFMQALQ LLFEVEQEIR  60
   61 TFSFQLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1pd3A
Description:	Influenza A NEP M1-binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits