YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114683958
Organism:	Pan troglodytes
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114683958.

Description	E-value	Query Range	Subject Range
gi\|149059845, gi... - gi\|68163465\|ref\|NP_001020185.1\| transmembrane protein 50B [Rattus norvegicus], gi\|60551525\|gb\|AAH913... TM50B_MOUSE - Transmembrane protein 50B OS=Mus musculus GN=Tmem50b PE=1 SV=1	1.0E-56	[1..158]	[1..158]
gi\|50729933 - gi\|50729933\|ref\|XP_416711.1\| PREDICTED: similar to C21orf4 [Gallus gallus]	1.0E-56	[1..157]	[1..157]
gi\|213627808, gi... - gi\|89266844\|emb\|CAJ83988.1\| transmembrane protein 50b; C21orf4 [Xenopus tropicalis], gi\|62858809\|ref...	5.0E-56	[1..158]	[1..158]
gi\|148229569, gi... - gi\|33417077\|gb\|AAH55980.1\| MGC68857 protein [Xenopus laevis], gi\|148229569\|ref\|NP_001079839.1\| hypot...	9.0E-56	[1..158]	[1..158]
gi\|28475307, gi\|... - gi\|47209347\|emb\|CAF93322.1\| unnamed protein product [Tetraodon nigroviridis], gi\|29125851\|emb\|CAD794...	4.0E-54	[1..157]	[1..157]
gi\|27882119, gi\|... - gi\|47087235\|ref\|NP_998694.1\| transmembrane protein 50A [Danio rerio], gi\|27882119\|gb\|AAH44368.1\| Tra...	6.0E-52	[1..157]	[1..163]
gi\|114575620 - gi\|114575620\|ref\|XP_001138153.1\| PREDICTED: small membrane protein 1 isoform 4 [Pan troglodytes] gi\|55729330 - gi\|55729330\|emb\|CAH91399.1\| hypothetical protein [Pongo abelii] ENSMMUT000000474... - null, null gi\|197097500 - gi\|197097500\|ref\|NP_001127413.1\| transmembrane protein 50A [Pongo abelii]	1.0E-49	[1..157]	[1..156]
TMEM50A - transmembrane protein 50A HGNC:30590\|MIM:6... - protein 50A gi\|117644536, gi... - gi\|117646700\|emb\|CAL37465.1\| hypothetical protein [synthetic construct], gi\|117644784\|emb\|CAL37858.1...	2.0E-49	[1..157]	[1..156]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFLDNFRW PECECIDWSE RRNAVASVVA GILFFTGWWI MIDAAVVYPK PEQLNHAFHT  60
   61 CGVFSTLAFF MINAVSNAQV RGDSYESGCL GRTGARVWLF IGFMLMFGSL IASMWILFGA 120
  121 YVTQNTDVYP GLAVFFQNAL IFFSTLIYKF GRTEELWT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	107.744727
Match:	PF05255.2
Description:	No description for PF05255.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits