YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115584947, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115584947, gi....

Description	E-value	Query Range	Subject Range
gi\|77382007, gi\|... - gi\|77458004\|ref\|YP_347509.1\| OmpF [Pseudomonas fluorescens Pf0-1], gi\|77382007\|gb\|ABA73520.1\| outer ...	3.0E-73	[1..350]	[1..344]
gi\|4580968 - gi\|4580968\|gb\|AAD24555.1\|AF117963_1 OprF [Pseudomonas cichorii]	7.0E-73	[1..350]	[1..346]
gi\|104780902, gi... - gi\|95109889\|emb\|CAK14594.1\| outer membrane protein OprF [Pseudomonas entomophila L48], gi\|104780902\|... gi\|95109889 - gi\|95109889\|emb\|CAK14594.1\| outer membrane protein OprF [Pseudomonas entomophila L48]	8.0E-73	[1..350]	[1..346]
gi\|26988814, gi\|... - gi\|26988814\|ref\|NP_744239.1\| OmpF family protein [Pseudomonas putida KT2440], gi\|24983615\|gb\|AAN6770... tr\|E4RAB4\|E4RAB4... - OprF OS=Pseudomonas putida (strain BIRD-1) GN=oprF PE=3 SV=1 gi\|82737946, gi\|... - gi\|82737946\|ref\|ZP_00900788.1\| outer membrane protein OprF [Pseudomonas putida F1], gi\|82714951\|gb\|E... tr\|I7BY62\|I7BY62... - OmpF family protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3250 PE=3 SV=1	8.0E-73	[1..350]	[1..344]
gi\|4530365 - gi\|4530365\|gb\|AAD22005.1\| major outer membrane protein; OprF [Pseudomonas fluorescens]	3.0E-72	[1..350]	[1..343]
gi\|4580972 - gi\|4580972\|gb\|AAD24559.1\|AF117967_1 OprF [Pseudomonas putida]	3.0E-71	[1..342]	[1..336]
gi\|151407, gi\|95008 - pir\|\|A39139 outer membrane protein OprF precursor - Pseudomonas syringae, gi\|151407\|gb\|AAA25910.1\| ... PORF_PSESY - Outer membrane porin F OS=Pseudomonas syringae pv. syringae GN=oprF PE=3 SV=1	3.0E-71	[1..350]	[1..344]
gi\|66045337, gi\|... - gi\|66045337\|ref\|YP_235178.1\| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas ...	9.0E-71	[1..350]	[1..344]
tr\|Q883Q1\|Q883Q1... - Outer membrane porin OprF OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=oprF PE=3 SV=1 gi\|28869499, gi\|... - gi\|28869499\|ref\|NP_792118.1\| outer membrane porin OprF [Pseudomonas syringae pv. tomato str. DC3000]... gi\|213927066, gi... - gi\|213968086\|ref\|ZP_03396231.1\| outer membrane porin OprF [Pseudomonas syringae pv. tomato T1], gi\|2...	1.0E-70	[1..350]	[1..344]

Back

Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKNTLGVV IGSLVAASAM NAFAQGQNSV EIEAFGKRYF TDSVRNMKNA DLYGGSIGYF  60
   61 LTDDVELALS YGEYHDVRGT YETGNKKVHG NLTSLDAIYH FGTPGVGLRP YVSAGLAHQN 120
  121 ITNINSDSQG RQQMTMANIG AGLKYYFTEN FFAKASLDGQ YGLEKRDNGH QGEWMAGLGV 180
  181 GFNFGGSKAA PAPEPVADVC SDSDNDGVC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2f1tA
Description:	Outer membrane protein OmpW
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [210-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNVDKCPDTP ANVTVDANGC PAVAEVVRVQ LDVKFDFDKS KVKENSYADI KNLADFMKQY  60
   61 PSTSTTVEGH TDSVGTDAYN QKLSERRANA VRDVLVNEYG VEGGRVNAVG YGESRPVADN 120
  121 ATAEGRAINR RVEAEVEAEA K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits