YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125617330, gi...
Organism:	Vibrio cholerae MO10
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125617330, gi....

Description	E-value	Query Range	Subject Range
NUDC_VIBVU - NADH pyrophosphatase OS=Vibrio vulnificus GN=nudC PE=3 SV=1 NUDC_VIBVU - NADH pyrophosphatase OS=Vibrio vulnificus (strain CMCP6) GN=nudC PE=3 SV=1	247.0	[0..10]	[267..3]
NUDC_VIBPA - NADH pyrophosphatase OS=Vibrio parahaemolyticus GN=nudC PE=3 SV=1 NUDC_VIBPA - NADH pyrophosphatase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nudC PE=3 SV... gi\|153838910, gi... - gi\|153838910\|ref\|ZP_01991577.1\| NADH pyrophosphatase [Vibrio parahaemolyticus AQ3810], gi\|149747618\|...	242.0	[0..7]	[267..2]
gi\|75828316 - gi\|75828316\|ref\|ZP_00757751.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n... gi\|75829160, gi\|... - gi\|75829160\|ref\|ZP_00758474.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n... gi\|75814787 - gi\|75814787\|ref\|ZP_00745337.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n...	242.0	[0..13]	[269..2]
gi\|91228704, gi\|... - gi\|91228704\|ref\|ZP_01262617.1\| NADH pyrophosphatase [Vibrio alginolyticus 12G01], gi\|91187730\|gb\|EAS...	239.0	[0..7]	[264..2]
gi\|75821889, gi\|... - gi\|75821889\|ref\|ZP_00751638.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n...	238.0	[0..13]	[269..2]
gi\|75818926, gi\|... - gi\|75818926\|ref\|ZP_00749037.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n...	238.0	[0..13]	[269..2]
gi\|75854222, gi\|... - gi\|75854222\|ref\|ZP_00761929.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n...	234.0	[0..7]	[264..2]
gi\|37200088, gi\|... - gi\|37681337\|ref\|NP_935946.1\| NADH pyrophosphatase [Vibrio vulnificus YJ016], gi\|37200088\|dbj\|BAC9591...	228.0	[0..25]	[267..1]
gi\|86147873, gi\|... - gi\|86147873\|ref\|ZP_01066178.1\| NADH pyrophosphatase [Vibrio sp. MED222], gi\|85834300\|gb\|EAQ52453.1\| ...	227.0	[0..12]	[266..5]
gi\|84393080, gi\|... - gi\|84393080\|ref\|ZP_00991846.1\| NADH pyrophosphatase [Vibrio splendidus 12B01], gi\|84376332\|gb\|EAP932...	225.0	[0..12]	[267..5]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLQAIRRS RVEKSDGKNA YWCVVSGSDL WLVDGQIPYG SAEQWDLPQE KAILVDRYQN  60
   61 SPVYWLNAAD IEQDRPLTSL RELLGVDEAL FLAASKAVQY GHMSQTIRFC PQCGGRNYLN 120
  121 HQQLAMQCHD CRTLHYPRIF PCIIVAVRKQ QQILLAQHPR HRNGMYTVIA GFVEVGETLE 180
  181 QCVAREVLEE TGIVVTNIRY FGSQPWAFPS SMMMAFLADY DTGELKPDYS ELSDANWFGI 240
  241 ENLPPVAPRG TIARALIEQT LADIAQDQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	1vk6A
Description:	Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits