YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123993963, gi...
Organism:	synthetic construct
Length:	529 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123993963, gi....

Description	E-value	Query Range	Subject Range
gi\|74011403 - gi\|74011403\|ref\|XP_537895.2\| PREDICTED: similar to UDP-glucuronosyltransferase 2B15 precursor (UDPGT...	0.0	[1..529]	[1..530]
gi\|114594465 - gi\|114594465\|ref\|XP_526600.2\| PREDICTED: UDP glycosyltransferase 2 family, polypeptide B7 isoform 3 ...	0.0	[1..529]	[1..529]
UGT2B7 - UDP glucuronosyltransferase 2 family, polypeptide B7	0.0	[1..529]	[1..529]
UDB33_MACMU - UDP-glucuronosyltransferase 2B33 OS=Macaca mulatta GN=UGT2B33 PE=1 SV=1	0.0	[1..529]	[1..529]
UD2B9_MACFA - UDP-glucuronosyltransferase 2B9 OS=Macaca fascicularis GN=UGT2B9 PE=2 SV=1	0.0	[1..529]	[1..529]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKWTSVIL LIQLSFCFSS GNCGKVLVWA AEYSHWMNIK TILDELIQRG HEVTVLASSA  60
   61 SILFDPNNSS ALKIEIYPTS LTKTELENFI MQQIKRWSDL PKDTFWLYFS QVQEIMSIFG 120
  121 DITRKFCKDV VSNKKFMKKV QESRFDVIFA DAIFPCSELL AELFNIPFVY SLSFSPGYTF 180
  181 EKHSGGFIFP PSYVPVVMSE LTDQMTFMER VKNMIYVLYF DFWFEIFDMK KWDQFYSEVL 240
  241 GRPTTLSETM GKADVWLIRN SWNFQFPYPL LPNVDFVGGL HCKPAKP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.99
Match:	2c1xA
Description:	Title Witheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.42803950895063	bayes_pls_golite062009
transferase activity	2.33605970115559	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	1.2321687597688	bayes_pls_golite062009
binding	0.852622252407136	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.842275843453224	bayes_pls_golite062009
glycogen phosphorylase activity	0.210114843884118	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.142838855983518	bayes_pls_golite062009
protein binding	0.106092295161028	bayes_pls_golite062009
kinase activity	0.104087933681512	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [288-529]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKEMEDFVQ SSGENGVVVF SLGSMVSNMT EERANVIASA LAQIPQKVLW RFDGNKPDTL  60
   61 GLNTRLYKWI PQNDLLGHPK TRAFITHGGA NGIYEAIYHG IPMVGIPLFA DQPDNIAHMK 120
  121 ARGAAVRVDF NTMSSTDLLN ALKRVINDPS YKENVMKLSR IQHDQPVKPL DRAVFWIEFV 180
  181 MRHKGAKHLR VAAHDLTWFQ YHSLDVIGFL LVCVATVIFI VTKCCLFCFW KFARKAKKGK 240
  241 ND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	2o6lA
Description:	No description for 2o6lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: