YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114587653, gi...
Organism:	Pan troglodytes
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114587653, gi....

Description	E-value	Query Range	Subject Range
gi\|109462309, gi... - gi\|62667553\|ref\|XP_577060.1\| PREDICTED: similar to family 3, member A protein [Rattus norvegicus], g...	2.0E-99	[1..222]	[1..226]
FAM3A_MOUSE - Protein FAM3A OS=Mus musculus GN=Fam3a PE=2 SV=1	5.0E-99	[1..222]	[1..226]
gi\|109132854 - gi\|109132854\|ref\|XP_001089464.1\| PREDICTED: similar to family 3, member A protein [Macaca mulatta]	5.0E-99	[1..222]	[1..226]
FAM3A_PONPY - Protein FAM3A precursor - Pongo pygmaeus (Orangutan) gi\|160213467 - gi\|160213467\|gb\|ABX10995.1\| family with sequence similarity 3, member A (predicted) [Papio anubis] FAM3A_PONAB - Protein FAM3A OS=Pongo abelii GN=FAM3A PE=2 SV=1	8.0E-99	[1..222]	[1..226]
gi\|74009185 - gi\|74009185\|ref\|XP_855396.1\| PREDICTED: similar to family 3, member A protein [Canis familiaris]	3.0E-98	[1..222]	[171..396]
gi\|111307202, gi... - gi\|115495131\|ref\|NP_001069777.1\| family 3, member A protein [Bos taurus], gi\|111307202\|gb\|AAI20369.1...	5.0E-95	[1..223]	[1..225]
FAM3A - family with sequence similarity 3, member A gi\|190691651, gi... - gi\|190691651\|gb\|ACE87600.1\| family with sequence similarity 3, member A protein [synthetic construct...	4.0E-94	[1..222]	[1..226]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSGVLRLL ALIFAIVTTW MFIRSYMSFS MKTIRLPRWL AASPTKEIQV KKYKCGLIKP  60
   61 CPANYFAFKI CSGAANVVGP TMCFEDRMIM SP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.390	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.202	N/A	N/A	d.58.7	RNA-binding domain, RBD

Predicted Domain #2

Region A:
Residues: [93-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKNNVGRGLN IALVNGTTGA VLGQKAFDMY SGDVMHLVKF LKEIPGGALV LVASYDDPGT  60
   61 KMNDESRKLF SDLGSSYAKQ LGFRDSWVFI GAKDLRGKSP FEQFLKNSPD TNKYEGWPEL 120
  121 LEMEGCMPPK PF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.701	0.146	cytokine activity	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.656	0.067	extracellular region	d.109.1	Actin depolymerizing proteins
View	Download	0.699	0.018	cytokine activity	c.23.1	CheY-like
View	Download	0.677	N/A	N/A	c.23.1	CheY-like
View	Download	0.663	N/A	N/A	c.23.1	CheY-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits