YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254829192, gi...
Organism:	Listeria monocytogenes FSL N3-165
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254829192, gi....

Description	E-value	Query Range	Subject Range
gi\|254852720 - gi\|254852720\|ref\|ZP_05242068.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL R2-503... gi\|254826145 - gi\|254826145\|ref\|ZP_05231146.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J1-194... gi\|225876878, gi... - gi\|226224416\|ref\|YP_002758523.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes Clip81459... gi\|255521928 - gi\|255521928\|ref\|ZP_05389165.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J1-175... gi\|254994429 - gi\|254994429\|ref\|ZP_05276619.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J2-064... gi\|254878069 - gi\|254878069\|ref\|ZP_05250779.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J2-071... gi\|46881315, gi\|... - gi\|46908045\|ref\|YP_014434.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria mon... gi\|126943595, gi... - gi\|254899490\|ref\|ZP_05259414.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes J0161], gi... gi\|153167657, gi... - gi\|153167657\|ref\|ZP_01927761.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria ... gi\|127765100, gi... - gi\|254912371\|ref\|ZP_05262383.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes J2818], gi... gi\|153202811, gi... - gi\|254933285\|ref\|ZP_05266644.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes HPB2262], ... gi\|254936698, gi... - gi\|254936698\|ref\|ZP_05268395.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes F6900], gi...	227.0	[0..1]	[220..1]
gi\|16800993 - gi\|16800993\|ref\|NP_471261.1\| hypothetical protein lin1927 [Listeria innocua Clip11262] gi\|16414428, gi\|... - pir\|\|AE1673 phosphoglycerate dehydrogenase homolog lin1927 [imported] - Listeria innocua (strain Cli...	225.0	[0..1]	[220..1]
gi\|47018551, gi\|... - gi\|47093050\|ref\|ZP_00230828.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria m... gi\|224500044 - gi\|224500044\|ref\|ZP_03668393.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria ... gi\|47096534, gi\|... - gi\|47096534\|ref\|ZP_00234124.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria m...	225.0	[0..1]	[220..4]
gi\|89200780, gi\|... - gi\|89200780\|ref\|ZP_01179530.1\| Iron-sulfur-dependent L-serine dehydratase beta subunit [Bacillus cer...	221.0	[0..1]	[219..2]
gi\|228922889, gi... - gi\|228922889\|ref\|ZP_04086187.1\| L-serine dehydratase, beta chain [Bacillus thuringiensis serovar hua... gi\|229071645, gi... - gi\|229071645\|ref\|ZP_04204863.1\| L-serine dehydratase, beta chain [Bacillus cereus F65185], gi\|228711... gi\|229047832, gi... - gi\|229047832\|ref\|ZP_04193412.1\| L-serine dehydratase, beta chain [Bacillus cereus AH676], gi\|2287236... gi\|228960407, gi... - gi\|228960407\|ref\|ZP_04122059.1\| L-serine dehydratase, beta chain [Bacillus thuringiensis serovar pak... gi\|228954424, gi... - gi\|228954424\|ref\|ZP_04116450.1\| L-serine dehydratase, beta chain [Bacillus thuringiensis serovar kur... gi\|218163372, gi... - gi\|218235415\|ref\|YP_002368942.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus... gi\|228636735, gi... - gi\|229146715\|ref\|ZP_04275081.1\| L-serine dehydratase, beta chain [Bacillus cereus BDRD-ST24], gi\|228... gi\|228654024, gi... - gi\|229129419\|ref\|ZP_04258390.1\| L-serine dehydratase, beta chain [Bacillus cereus BDRD-Cer4], gi\|228... gi\|228671995, gi... - gi\|229111613\|ref\|ZP_04241164.1\| L-serine dehydratase, beta chain [Bacillus cereus Rock1-15], gi\|2286... gi\|206970981, gi... - gi\|206970981\|ref\|ZP_03231932.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|228702019, gi... - gi\|229081397\|ref\|ZP_04213900.1\| L-serine dehydratase, beta chain [Bacillus cereus Rock4-2], gi\|22870... gi\|29897777, gi\|... - gi\|30022220\|ref\|NP_833851.1\| L-serine dehydratase [Bacillus cereus ATCC 14579], gi\|29897777\|gb\|AAP11... gi\|229192352, gi... - gi\|229192352\|ref\|ZP_04319316.1\| L-serine dehydratase, beta chain [Bacillus cereus ATCC 10876], gi\|22... gi\|229180420, gi... - gi\|229180420\|ref\|ZP_04307763.1\| L-serine dehydratase, beta chain [Bacillus cereus 172560W], gi\|22860...	220.0	[0..1]	[219..2]
gi\|229186386, gi... - gi\|229186386\|ref\|ZP_04313550.1\| L-serine dehydratase, beta chain [Bacillus cereus BGSC 6E1], gi\|2285... gi\|229093202, gi... - gi\|229093202\|ref\|ZP_04224320.1\| L-serine dehydratase, beta chain [Bacillus cereus Rock3-42], gi\|2286... gi\|228947859, gi... - gi\|228947859\|ref\|ZP_04110146.1\| L-serine dehydratase, beta chain [Bacillus thuringiensis serovar mon... gi\|228935461, gi... - gi\|228935461\|ref\|ZP_04098279.1\| L-serine dehydratase, beta chain [Bacillus thuringiensis serovar and... gi\|118418562, gi... - gi\|118479337\|ref\|YP_896488.1\| L-serine ammonia-lyase [Bacillus thuringiensis str. Al Hakam], gi\|1184... gi\|42739183, gi\|... - gi\|42783255\|ref\|NP_980502.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus cer... gi\|222097588, gi... - gi\|222097588\|ref\|YP_002531645.1\| L-serine dehydratase, beta subunit [Bacillus cereus Q1], gi\|2212416... gi\|218905278, gi... - gi\|218905278\|ref\|YP_002453112.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus... gi\|196047201, gi... - gi\|196047201\|ref\|ZP_03114417.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|196038789, gi... - gi\|196038789\|ref\|ZP_03106097.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|49330112, gi\|... - gi\|49478556\|ref\|YP_038204.1\| L-serine dehydratase subunit beta [Bacillus thuringiensis serovar konku... gi\|51974825, gi\|... - gi\|52141356\|ref\|YP_085473.1\| L-serine dehydratase, beta subunit [Bacillus cereus E33L], gi\|51974825\|... gi\|228842966, gi... - gi\|228916779\|ref\|ZP_04080344.1\| L-serine dehydratase, beta chain [Bacillus thuringiensis serovar pul... gi\|225866124, gi... - gi\|225866124\|ref\|YP_002751502.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus...	219.0	[0..1]	[219..1]
gi\|47555190, gi\|... - gi\|47568200\|ref\|ZP_00238904.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus c...	219.0	[0..1]	[219..1]
gi\|47529658, gi\|... - gi\|47529658\|ref\|YP_021007.1\| l-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ant... gi\|30258860, gi\|... - gi\|30264215\|ref\|NP_846592.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ant... gi\|21402194, gi\|... - gi\|65321531\|ref\|ZP_00394490.1\| COG1760: L-serine deaminase [Bacillus anthracis str. A2012], ref\|NP_6... gi\|49187045, gi\|... - gi\|49187045\|ref\|YP_030297.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ant... gi\|172082058, gi... - gi\|177652723\|ref\|ZP_02935139.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|190562758, gi... - gi\|190565839\|ref\|ZP_03018758.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|227816918, gi... - gi\|227816918\|ref\|YP_002816927.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus... gi\|229265101, gi... - gi\|229600693\|ref\|YP_002868438.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus... gi\|254683905 - gi\|254683905\|ref\|ZP_05147765.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|254736253 - gi\|254736253\|ref\|ZP_05193959.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|254744142 - gi\|254744142\|ref\|ZP_05201825.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|254754076 - gi\|254754076\|ref\|ZP_05206111.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|254758232 - gi\|254758232\|ref\|ZP_05210259.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|164713084, gi... - gi\|165871165\|ref\|ZP_02215815.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|167633586, gi... - gi\|167633586\|ref\|ZP_02391910.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|167512592, gi... - gi\|167639533\|ref\|ZP_02397804.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|170668862, gi... - gi\|170687245\|ref\|ZP_02878463.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ... gi\|170129185, gi... - gi\|170705645\|ref\|ZP_02896108.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus ...	218.0	[0..1]	[219..1]
gi\|89154113, gi\|... - gi\|89207935\|ref\|ZP_01186462.1\| Iron-sulfur-dependent L-serine dehydratase beta subunit [Bacillus wei...	215.0	[0..1]	[219..2]
gi\|29344665, gi\|... - gi\|29377199\|ref\|NP_816353.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Enterococcus...	215.0	[0..1]	[219..4]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNSVFDII GPVMIGPSSS HTAGASRIGA IARAVFNEQP SQVDIHLYGS FAKTYKGHGT  60
   61 DVALIGGLLG FEPDDPRMKE SPKLAEEWGM RIQFIEEVEE PPHPNTVKLV LKHGMQQMTL 120
  121 IGASIGGGKV EIIRLNEFEL EFTGTAPAIL ILHQDKFGAI AAVSSVIADH KINIGQMKVS 180
  181 RKVKGDEALM VIEVDQQVEQ ALISKIAELS GIYQVASVMI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1psdA
Description:	Phosphoglycerate dehydrogenase; Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	2.7207189033055	bayes_pls_golite062009
oxidoreductase activity	1.95477050413	bayes_pls_golite062009
acetolactate synthase activity	1.81856869558384	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.771153340292	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.66554302844944	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009
phosphoglycerate dehydrogenase activity	0.0511824933768104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: