YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126510732, gi...
Organism:	Vibrio cholerae NCTC 8457
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126510732, gi....

Description	E-value	Query Range	Subject Range
gi\|229512410, gi... - gi\|229512410\|ref\|ZP_04401884.1\| hypothetical protein VCB_000050 [Vibrio cholerae TMA 21], gi\|2293505... gi\|75815405 - gi\|75815405\|ref\|ZP_00745916.1\| COG2973: Trp operon repressor [Vibrio cholerae V52] gi\|75826059 - gi\|75826059\|ref\|ZP_00755494.1\| COG2973: Trp operon repressor [Vibrio cholerae O395] gi\|229519972, gi... - gi\|229519972\|ref\|ZP_04409402.1\| hypothetical protein VIF_000488 [Vibrio cholerae TM 11079-80], gi\|22...	133.0	[0..16]	[118..1]
gi\|75819391, gi\|... - gi\|75819391\|ref\|ZP_00749473.1\| COG2973: Trp operon repressor [Vibrio cholerae V51], gi\|116220078\|ref... gi\|229505680, gi... - gi\|229505680\|ref\|ZP_04395190.1\| hypothetical protein VCF_000891 [Vibrio cholerae BX 330286], gi\|2293... gi\|229354270, gi... - gi\|229508746\|ref\|ZP_04398239.1\| hypothetical protein VCE_000151 [Vibrio cholerae B33], gi\|229354270\|... gi\|75829553, gi\|... - gi\|75829553\|ref\|ZP_00758852.1\| COG2973: Trp operon repressor [Vibrio cholerae MO10], gi\|116188427\|re... gi\|229344193, gi... - gi\|229519504\|ref\|ZP_04408947.1\| hypothetical protein VCC_003534 [Vibrio cholerae RC9], gi\|229344193\|... gi\|229608699, gi... - gi\|229608699\|ref\|YP_002879347.1\| hypothetical protein VCD_003621 [Vibrio cholerae MJ-1236], gi\|22937... TRPR_VIBCH - Trp operon repressor homolog OS=Vibrio cholerae GN=trpR PE=3 SV=2 TRPR_VIBCH - Trp operon repressor homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961...	132.0	[0..16]	[118..1]
TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii GN=trpR PE=3 SV=1 TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / T...	130.0	[0..10]	[112..5]
gi\|75824082, gi\|... - gi\|75824082\|ref\|ZP_00753549.1\| COG2973: Trp operon repressor [Vibrio cholerae RC385], gi\|116217220\|r...	130.0	[0..16]	[118..1]
TRPR_CHLCV - Trp operon repressor homolog OS=Chlamydophila caviae GN=trpR PE=3 SV=1 TRPR_CHLCV - Trp operon repressor homolog OS=Chlamydophila caviae (strain GPIC) GN=trpR PE=3 SV=1	127.0	[0..16]	[109..1]
gi\|11360832 - pir\|\|H82585 conserved hypothetical protein XF2221 [imported] - Xylella fastidiosa (strain 9a5c) gi\|9107368, gi\|1... - gi\|9107368\|gb\|AAF85020.1\|AE004034_10 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|15...	126.0	[0..6]	[116..4]
TRPR_VIBVU - Trp operon repressor homolog OS=Vibrio vulnificus GN=trpR PE=3 SV=1 TRPR_VIBVU - Trp operon repressor homolog OS=Vibrio vulnificus (strain CMCP6) GN=trpR PE=3 SV=1 TRPR_VIBVY - Trp operon repressor homolog OS=Vibrio vulnificus (strain YJ016) GN=trpR PE=3 SV=1	124.0	[0..16]	[110..1]
gi\|170663373, gi... - gi\|170663373\|gb\|EDT16056.1\| TrpR homolog YerC/YecD [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|110799881, gi... - gi\|110799881\|ref\|YP_697023.1\| TrpR-like protein YerC/YecD [Clostridium perfringens ATCC 13124], gi\|1... gi\|169296687, gi... - gi\|169347004\|ref\|ZP_02865946.1\| TrpR homolog YerC/YecD [Clostridium perfringens C str. JGS1495], gi\|... gi\|182381246, gi... - gi\|182381246\|gb\|EDT78725.1\| TrpR homolog YerC/YecD [Clostridium perfringens NCTC 8239], gi\|168216701... gi\|168213245, gi... - gi\|170715293\|gb\|EDT27475.1\| TrpR homolog YerC/YecD [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168210362, gi... - gi\|170711531\|gb\|EDT23713.1\| TrpR homolog YerC/YecD [Clostridium perfringens B str. ATCC 3626], gi\|16... gi\|177908972, gi... - gi\|182625816\|ref\|ZP_02953583.1\| TrpR homolog YerC/YecD [Clostridium perfringens D str. JGS1721], gi\|... gi\|18311316, gi\|... - gi\|18311316\|ref\|NP_563250.1\| TrpR-like protein YerC/YecD [Clostridium perfringens str. 13], gi\|18145...	124.0	[0..22]	[109..10]
gi\|1633316, gi\|1... - gi\|1633354\|pdb\|1RCS\|B Chain B, Nmr Study Of Trp Repressor-Operator Dna Complex, gi\|1633353\|pdb\|1RCS\|...	123.0	[0..11]	[114..2]
TRPR_ENTCL - Trp operon repressor OS=Enterobacter cloacae GN=trpR PE=3 SV=1	123.0	[0..10]	[111..4]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHYNRPVYH LTSTTMVQQP SFSEWQQVLD LVKQAVQQEQ HEMLLTMLMT PDEREALVAR  60
   61 VNIVHELLQG ELSQRQISQM LGVGIATITR GSNELKSRSE DEKAALAQLL MPPPSSEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1rcsA
Description:	Trp repressor, TrpR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.49137583648289	bayes_pls_golite062009
DNA binding	1.47393364683412	bayes_pls_golite062009
binding	0.833538516780913	bayes_pls_golite062009
sequence-specific DNA binding	0.47954468042493	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: