YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114645787
Organism:	Pan troglodytes
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114645787.

Description	E-value	Query Range	Subject Range
ENSOCUP000000099... - pep:novel chromosome:oryCun2:4:48350422:48426536:1 gene:ENSOCUG00000011552 transcript:ENSOCUT0000001... YETS4_MOUSE - YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1	3.0E-82	[1..227]	[1..227]
gi\|115496730, gi... - gi\|81674278\|gb\|AAI09627.1\| YEATS domain containing 4 [Bos taurus], gi\|115496730\|ref\|NP_001069833.1\| ... gi\|238814999, gi... - gi\|251823926\|ref\|NP_001156531.1\| YEATS domain containing 4 [Ovis aries], gi\|238814999\|gb\|ACR56696.1\|...	2.0E-81	[1..227]	[1..227]
gi\|52345874, gi\|... - gi\|89269060\|emb\|CAJ83529.1\| YEATS domain containing 4 [Xenopus tropicalis], gi\|52345874\|ref\|NP_00100...	8.0E-81	[1..227]	[1..227]
gi\|18419436, gi\|... - gi\|18419436\|gb\|AAL69326.1\|AF410481_1 GAS41 [Gallus gallus], gi\|118405208\|ref\|NP_001072971.1\| YEATS d...	1.0E-80	[1..227]	[1..227]
gi\|38014526, gi\|... - gi\|38014526\|gb\|AAH60411.1\| MGC68689 protein [Xenopus laevis], gi\|148232610\|ref\|NP_001083406.1\| hypot...	3.0E-80	[1..227]	[1..227]
gi\|9755857 - gi\|9755857\|emb\|CAC01935.1\| NuBI-1 protein [Homo sapiens]	7.0E-80	[5..227]	[1..223]
gi\|34864887, gi\|... - gi\|34864887\|ref\|XP_216890.2\| PREDICTED: similar to YEATS domain containing 4 [Rattus norvegicus], gi...	3.0E-79	[5..227]	[1..223]
gi\|76682080 - gi\|76682080\|ref\|XP_872200.1\| PREDICTED: similar to YEATS domain containing 4 [Bos taurus] gi\|73968736 - gi\|73968736\|ref\|XP_531673.2\| PREDICTED: similar to YEATS domain containing 4 [Canis familiaris]	4.0E-79	[5..227]	[1..223]
gi\|118790591, gi... - gi\|118790591\|ref\|XP_318687.3\| ENSANGP00000022234 [Anopheles gambiae str. PEST], gi\|116118019\|gb\|EAA1...	2.0E-75	[5..224]	[2..227]
gi\|157132764, gi... - gi\|157132764\|ref\|XP_001662633.1\| YEATS domain containing protein 4 [Aedes aegypti], gi\|108871078\|gb\|...	4.0E-75	[6..224]	[5..229]

Back

Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRMAEFGP DSGGRVKGVT IVKPIVYGNV ARYFGKKREE DGHTHQWTVY VKPYRNEDMS  60
   61 AYVKKIQFKL HESYGNPLRV VTKPPYEITE TGWGEFEIII KIFFIDPNER PVTLYHLLKL 120
  121 FQSDTNAMLG KK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.537602
Match:	PF03366.7
Description:	No description for PF03366.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVVSEFYDEM IFQDPTAMMQ QLLTTSRQLT LGAYKHETEF AELEVKTREK LEAAKKKTSF  60
   61 EIAELKERLK ASRETINCLK NEIRKLEEDD QAKDI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.989
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits