YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123981992, gi...
Organism:	synthetic construct
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123981992, gi....

Description	E-value	Query Range	Subject Range
NDUB7_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Mus musculus GN=Ndufb7 PE=1 SV=3	217.0	[0..1]	[137..1]
NDUB7_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo pygmaeus GN=NDUFB7 PE=2 SV=3 gi\|111662058 - gi\|111662058\|gb\|ABH12200.1\| mitochondrial complex I subunit NDUFB7 [Gorilla gorilla] NDUB7_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Gorilla gorilla gorilla GN=NDUFB7 PE=... NDUB7_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo abelii GN=NDUFB7 PE=2 SV=3 gi\|55648479 - gi\|55648479\|ref\|XP_524135.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	216.0	[0..1]	[137..1]
NDUB7_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pan troglodytes GN=NDUFB7 PE=2 SV=3	215.0	[0..1]	[137..1]
NDUB7_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Bos taurus GN=NDUFB7 PE=1 SV=2	214.0	[0..1]	[137..1]
gi\|109123688 - gi\|109123688\|ref\|XP_001111436.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	211.0	[0..1]	[137..1]
gi\|157823197, gi... - gi\|34851467\|ref\|XP_341665.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	205.0	[0..1]	[137..1]
gi\|73986646 - gi\|73986646\|ref\|XP_533892.2\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	199.0	[0..1]	[137..1]
gi\|180233, gi\|105595 - gi\|180233\|gb\|AAA35675.1\| cell adhesion protein (SQM1), pir\|\|A34653 cell adhesion protein SQM1 - huma...	193.0	[0..1]	[137..1]
gi\|38328313, gi\|... - gi\|41053587\|ref\|NP_957142.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [Danio reri...	188.0	[0..1]	[120..1]
gi\|38048555, gi\|... - gi\|38048555\|gb\|AAR10180.1\| similar to Drosophila melanogaster CG5548 [Drosophila yakuba], gi\|1954787...	181.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAHLVRRYL GDASVEPDPL QMPTFPPDYG FPERKEREMV ATQQEMMDAQ LRLQLRDYCA  60
   61 HHLIRLLKCK RDSFPNFLAC KQERHDWDYC EHRDYVMRMK EFERERRLLQ RKKRREKKAA 120
  121 ELAKGQGPGE VDPKVAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.309804
Match:	PF05676.4
Description:	No description for PF05676.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits