YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114685787, gi...
Organism:	Pan troglodytes
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114685787, gi....

Description	E-value	Query Range	Subject Range
QCR9_MOUSE - Cytochrome b-c1 complex subunit 9 OS=Mus musculus GN=Uqcr10 PE=1 SV=1	115.0	[0..1]	[63..1]
QCR9_BOVIN - Cytochrome b-c1 complex subunit 9 OS=Bos taurus GN=UQCR10 PE=1 SV=3	112.0	[0..1]	[63..1]
gi\|194043200, gi... - gi\|87047640\|gb\|ABD18453.1\| ubiquinol-cytochrome c reductase complex [Sus scrofa], gi\|194043200\|ref\|X...	111.0	[0..1]	[63..1]
gi\|149720294 - gi\|149720294\|ref\|XP_001498795.1\| PREDICTED: similar to ubiquinol-cytochrome c reductase complex [Equ... gi\|73994981 - gi\|73994981\|ref\|XP_852402.1\| PREDICTED: similar to ubiquinol-cytochrome c reductase complex 7.2kDa p...	109.0	[0..1]	[63..1]
gi\|5822466, gi\|3... - gi\|5822466\|pdb\|2BCC\|J Chain J, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken, gi\|3660384\|pd...	109.0	[0..3]	[63..2]
gi\|149047568, gi... - gi\|187960180\|gb\|AAI66935.1\| LOC685322 protein [Rattus norvegicus], gi\|149047568\|gb\|EDM00238.1\| rCG36...	107.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATLTSKL YSLLFRRTST FALTIIVGVM FFERAFDQGA DAIYDHINEG KLWKHIKHKY  60
   61 ENK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1be3J
Description:	Subunit X (nonheme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.4233708879266	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.4233708879266	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.02819078579896	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.49966228892074	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.34892457921063	bayes_pls_golite062009
oxidoreductase activity	4.79573172758254	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.75909017447917	bayes_pls_golite062009
cation transmembrane transporter activity	4.52463184109793	bayes_pls_golite062009
ion transmembrane transporter activity	4.3345937506905	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.94101064926447	bayes_pls_golite062009
substrate-specific transporter activity	3.75736033225611	bayes_pls_golite062009
catalytic activity	0.545407789079971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: