YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123981844, gi...
Organism:	synthetic construct
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123981844, gi....

Description	E-value	Query Range	Subject Range
gi\|109086993 - gi\|109086993\|ref\|XP_001091545.1\| PREDICTED: phosphatidylserine synthase 1 isoform 1 [Macaca mulatta]	0.0	[1..473]	[1..473]
PTSS1_RAT - Phosphatidylserine synthase 1 OS=Rattus norvegicus GN=Ptdss1 PE=2 SV=1	0.0	[1..473]	[1..473]
PTSS1_BOVIN - Phosphatidylserine synthase 1 OS=Bos taurus GN=PTDSS1 PE=2 SV=1	0.0	[1..473]	[1..473]
gi\|73999621 - gi\|73999621\|ref\|XP_854779.1\| PREDICTED: similar to Phosphatidylserine synthase I (PtdSer synthase-1)...	0.0	[9..473]	[43..507]
gi\|26352974 - gi\|26352974\|dbj\|BAC40117.1\| unnamed protein product [Mus musculus]	0.0	[1..473]	[1..473]
gi\|220281 - gi\|220281\|dbj\|BAA01084.1\| phosphatidylserine synthase [Cricetulus sp.] PTSS1_CRIGR - Phosphatidylserine synthase 1 OS=Cricetulus griseus GN=PTDSS1 PE=2 SV=1 PSS1_CRILO - (Q00576) Phosphatidylserine synthase I (EC 2.7.8.-) (PtdSer synthase-1) (PSS-1) (Serine-exchange enz...	0.0	[1..473]	[1..471]
gi\|27881972, gi\|... - gi\|41055684\|ref\|NP_957250.1\| phosphatidylserine synthase 1 [Danio rerio], gi\|27881972\|gb\|AAH44533.1\|...	0.0	[1..472]	[1..465]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCVGSRTL SKDDVNYKMH FRMINEQQVE DITIDFFYRP HTITLLSFTI VSLMYFAFTR  60
   61 DDSVPEDNIW RGILSVIFFF LIISVLAFPN GPFTRPHPAL WRMVFGLSVL YFLFLVFLLF 120
  121 LNFEQVKSLM YWLDPNLRYA TRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADVMEYAVNC HVITWERIIS HFDIFAFGHF WGWAMKALLI RSYGLCWTIS ITWELTELFF  60
   61 MHLLPNFAEC WWDQVILDIL LCNGGGIWLG MVVCRF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEMRTYHWAS FKDIHTTTGK IKRAVLQFTP ASWTYVRWFD PKSSFQRVAG VYLFMIIWQL  60
   61 TELNTFFLKH IFVFQASHPL SWGRILFIGG ITAPTVRQYY AYLTDTQCKR VGTQCWVFGV 120
  121 IGFLEAIVCI KFGQDLFSKT QILYVVLWLL CVAFTTFLCL YGMIWYAEHY GHREKTYSEC 180
  181 EDGTYSPEIS WHHRKGTKGS EDSPPKHAGN NESHSSRRRN RHSKSKVTNG VGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits