YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126329113
Organism:	Monodelphis domestica
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126329113.

Description	E-value	Query Range	Subject Range
gi\|109461574, gi... - gi\|109461574\|ref\|XP_001078234.1\| PREDICTED: similar to 40S ribosomal protein S16 [Rattus norvegicus]...	1.0E-59	[1..146]	[55..200]
gi\|60334810 - gi\|60334810\|gb\|AAH90618.1\| Rps16 protein [Mus musculus]	4.0E-58	[1..146]	[27..172]
gi\|109111904 - gi\|109111904\|ref\|XP_001096607.1\| PREDICTED: similar to 40S ribosomal protein S16 [Macaca mulatta]	9.0E-58	[2..146]	[70..213]
gi\|60652773 - gi\|60652773\|gb\|AAX29081.1\| ribosomal protein S16 [synthetic construct]	2.0E-57	[1..146]	[1..146]
gi\|197127320, gi... - gi\|197127322\|gb\|ACH43820.1\| putative ribosomal protein S16 [Taeniopygia guttata], gi\|197127321\|gb\|AC... gi\|50728374 - gi\|50728374\|ref\|XP_416113.1\| PREDICTED: similar to Rps16 protein [Gallus gallus]	5.0E-57	[1..146]	[1..146]
gi\|58331994, gi\|... - gi\|89272448\|emb\|CAJ83293.1\| ribosomal protein S16 [Xenopus tropicalis], gi\|58331994\|ref\|NP_001011146... gi\|123959702, gi... - gi\|76780311\|gb\|AAI06274.1\| Rps16 protein [Xenopus laevis], gi\|123959702\|gb\|AAI28924.1\| Rps16 protein...	3.0E-56	[1..146]	[1..146]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKGPLQSV QVFGRKKTAT AVAHCKRGNG LIKVNGRPLE MIEPRTLQYK LLEPVLLLGK  60
   61 ERFAGVDIRV RVKGGGHVAQ IYAIRQSISK ALVAYYQKYV DEASKKEIKD ILIQYDRTLL 120
  121 VADPRRCESK KFGGPGARAR YQKSYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	1s1hI
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits