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View Structure Prediction Details

Protein: gi|124000699, gi...
Organism: synthetic construct
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000699, gi....

Description E-value Query
Range
Subject
Range
gi|114652879 - gi|114652879|ref|XP_001152220.1| PREDICTED: mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylgluc...
0.0 [1..447] [1..447]
MGAT2_PIG - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Sus scrofa GN=MGAT2 PE=3 S...
0.0 [1..447] [1..446]
MGAT2_RAT - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat2...
0.0 [1..447] [1..442]
gi|61864843 - gi|61864843|ref|XP_590294.1| PREDICTED: similar to beta-1,2-N-acetylglucosaminyltransferase II [Bos ...
0.0 [1..447] [1..446]
MGAT2_MOUSE - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus GN=Mgat2 PE=1...
0.0 [1..447] [1..442]
gi|57090127 - gi|57090127|ref|XP_537434.1| PREDICTED: similar to Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylgl...
0.0 [1..447] [1..446]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFRIYKRKV LILTLVVAAC GFVLWSSNGR QRKNEALAPP LLDAEPARGA GGRGGDHPSV  60
   61 AVGIRRVSNV SAASLVPAVP QPEADNLTLR YRSLVYQLNF DQTLRNVDKA GTWAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RELVLVVQVH NRPEYLRLLL DSLRKAQGID NVLVIFSHDF WSTEINQLIA GVNFCPVLQV  60
   61 FFPFSIQLYP NEFPGSDPRD CPRDLPKNAA LKLGCINAEY PDSFGHYREA KFSQTKHHWW 120
  121 WKLHFVWERV KILRDYAGLI LFLEEDHYLA PDFYHVFKKM WKLKQQECPE CDVLSLGTYS 180
  181 ASRSFYGMAD KV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [308-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVKTWKSTEH NMGLALTRNA YQKLIECTDT FCTYDDYNWD WTLQYLTVSC LPKFWKVLVP  60
   61 QIPRIFHAGD CGMHHKKTCR PSTQSAQIES LLNNNKQYMF PETLTISEKF TVVAISPPRK 120
  121 NGGWGDIRDH ELCKSYRRLQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.619 0.115 Golgi stack a.77.1 DEATH domain
View Download 0.366 0.054 Golgi stack a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.778 0.029 Golgi stack a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.420 0.026 Golgi stack c.55.4 Translational machinery components
View Download 0.396 N/A N/A a.77.1 DEATH domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle