YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153820367, gi...
Organism:	Vibrio cholerae NCTC 8457
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153820367, gi....

Description	E-value	Query Range	Subject Range
gi\|75829286, gi\|... - gi\|75829286\|ref\|ZP_00758594.1\| COG2755: Lysophospholipase L1 and related esterases [Vibrio cholerae ... gi\|75814668 - gi\|75814668\|ref\|ZP_00745229.1\| COG2755: Lysophospholipase L1 and related esterases [Vibrio cholerae ... gi\|75825584 - gi\|75825584\|ref\|ZP_00755020.1\| COG2755: Lysophospholipase L1 and related esterases [Vibrio cholerae ...	197.0	[0..17]	[215..1]
gi\|75819094, gi\|... - gi\|75819094\|ref\|ZP_00749193.1\| COG2755: Lysophospholipase L1 and related esterases [Vibrio cholerae ...	195.0	[0..17]	[215..1]
gi\|153827484, gi... - gi\|153827484\|ref\|ZP_01980151.1\| arylesterase [Vibrio cholerae MZO-2], gi\|149738594\|gb\|EDM52949.1\| ar... gi\|116215677, gi... - gi\|75822408\|ref\|ZP_00752040.1\| COG2755: Lysophospholipase L1 and related esterases [Vibrio cholerae ...	195.0	[0..17]	[215..1]
gi\|37200974, gi\|... - gi\|37676432\|ref\|NP_936828.1\| lysophospholipase L1 [Vibrio vulnificus YJ016], gi\|37200974\|dbj\|BAC9679...	192.0	[0..1]	[215..16]
gi\|46914409, gi\|... - gi\|54309970\|ref\|YP_130990.1\| putative arylesterase [Photobacterium profundum SS9], gi\|46914409\|emb\|C...	188.0	[0..3]	[215..34]
ESTE_VIBMI - Arylesterase OS=Vibrio mimicus PE=1 SV=1	188.0	[0..17]	[215..1]
gi\|77384238, gi\|... - gi\|77460235\|ref\|YP_349742.1\| lipolytic protein [Pseudomonas fluorescens Pf0-1], gi\|77384238\|gb\|ABA75...	187.0	[0..18]	[215..4]
gi\|28900726, gi\|... - gi\|28900726\|ref\|NP_800381.1\| arylesterase [Vibrio parahaemolyticus RIMD 2210633], gi\|28809172\|dbj\|BA... gi\|28809172 - gi\|28809172\|dbj\|BAC62214.1\| arylesterase [Vibrio parahaemolyticus RIMD 2210633] gi\|149747653, gi... - gi\|153838896\|ref\|ZP_01991563.1\| arylesterase [Vibrio parahaemolyticus AQ3810], gi\|149747653\|gb\|EDM58...	187.0	[0..17]	[215..1]
gi\|106881960, gi... - gi\|106881960\|ref\|ZP_01349364.1\| Arylesterase [Psychromonas ingrahamii 37], gi\|106763232\|gb\|EAT20112....	187.0	[0..3]	[215..26]
gi\|91226151, gi\|... - gi\|91226151\|ref\|ZP_01261041.1\| arylesterase [Vibrio alginolyticus 12G01], gi\|91189385\|gb\|EAS75663.1\|...	184.0	[0..17]	[215..1]

Back

Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNLDSDCA EMMDVCMTRL LSFLFVVLFS AAASSKTLLV LGDSLSAGYE MPIEQAWPSL  60
   61 LAEELVEQGQ TVTVVNGSIS GDTTGNGLAR LPSLLSQHQP DTVLIELGAN DGLRGFPPQT 120
  121 VTHNLTTMIE QIQAKNAKVI LMQIRIPPNY GKRYSDAFYQ IYPSLAEQFS IPLIPFFLEQ 180
  181 VILKPEWMMA DGLHPKPEAQ PWIAKFVAEH LAAHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	1jrlA
Description:	Thioesterase I, TAP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.763755166526827	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: