YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254244729, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254244729, gi....

Description	E-value	Query Range	Subject Range
gi\|49088192 - gi\|49088192\|gb\|AAT51542.1\| PA4457 [synthetic construct]	1.0E-61	[1..326]	[1..326]
gi\|194549866, gi... - gi\|254238881\|ref\|ZP_04932204.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|116052489, gi... - gi\|116052489\|ref\|YP_792802.1\| hypothetical protein PA14_57890 [Pseudomonas aeruginosa UCBPP-PA14], g...	2.0E-61	[1..326]	[1..326]
gi\|150960935, gi... - gi\|94415571\|ref\|ZP_01295411.1\| hypothetical protein PaerP_01002734 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-61	[3..326]	[1..324]
gi\|84323011 - gi\|84323011\|ref\|ZP_00971088.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form... gi\|107099958 - gi\|107099958\|ref\|ZP_01363876.1\| hypothetical protein PaerPA_01000979 [Pseudomonas aeruginosa PACS2]	8.0E-61	[3..326]	[1..324]
gi\|32039673 - gi\|32039673\|ref\|ZP_00137945.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form... gi\|84316990 - gi\|84316990\|ref\|ZP_00965447.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form...	1.0E-60	[3..326]	[1..324]
gi\|67093770, gi\|... - gi\|67658682\|ref\|ZP_00456052.1\| KpsF/GutQ [Burkholderia cenocepacia AU 1054], gi\|67093770\|gb\|EAM11309... gi\|67665661, gi\|... - gi\|67665661\|ref\|ZP_00462921.1\| KpsF/GutQ [Burkholderia cenocepacia HI2424], gi\|67100754\|gb\|EAM17904....	3.0E-60	[1..326]	[32..357]
Y1546_AQUAE - Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1 Y1546_AQUAE, YF4... - (O67500) Hypothetical phosphosugar isomerase AQ_1546, Uncharacterized phosphosugar isomerase aq_1546...	5.0E-60	[4..323]	[1..319]
gi\|105893908, gi... - gi\|107023719\|ref\|YP_622046.1\| KpsF/GutQ family protein [Burkholderia cenocepacia AU 1054], gi\|105893... gi\|116690806, gi... - gi\|116690806\|ref\|YP_836429.1\| KpsF/GutQ family protein [Burkholderia cenocepacia HI2424], gi\|1166488...	7.0E-60	[1..326]	[2..327]
gi\|77968330, gi\|... - gi\|78067585\|ref\|YP_370354.1\| KpsF/GutQ family sugar isomerase [Burkholderia sp. 383], gi\|77968330\|gb...	7.0E-60	[1..326]	[2..327]
gi\|53611258, gi\|... - gi\|67156186\|ref\|ZP_00417812.1\| KpsF/GutQ [Azotobacter vinelandii AvOP], ref\|ZP_00090080.2\| COG0794: ... gi\|67086516, gi\|... - gi\|67156186\|ref\|ZP_00417812.1\| KpsF/GutQ [Azotobacter vinelandii AvOP], gi\|67086516\|gb\|EAM05985.1\| K...	8.0E-60	[3..326]	[1..324]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMSQNLDFI HSAQRTIGLE RDAVDSLLAR IGDDFVKACE LLLAGKGRVV VVGMGKSGHV  60
   61 GKKIAATLAS TGTPSFFVHP AEASHGDMGM ITKDDVVLAL SNSGSTAEIV TLLPLIKRLG 120
  121 ITLISMTGNP ESPLAKAAEV NLDASVGQEA CPLNLAPTSS TTVTLVLGDA LAIALLEARG 180
  181 FTAEDFAFSH PGGALGRRLL LKVEDVMHVG EGLPQVLLGT SLTGALMEMT RKGLGMTVVL 240
  241 DEHGKLAGIF TDGDLRRALD RGIDVRQVTI DQVMTVHGKT VRAEILAAEA LKIMEDNKIG 300
  301 ALVVVDADDR PVGALNMHDL LRAGVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.045757
Match:	1moqA
Description:	ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	2.51573700304958	bayes_pls_golite062009
catalytic activity	1.5278037255884	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.27102475335512	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.11549102314657	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.718035369881213	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.543772038478781	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: