YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153820740, gi...
Organism:	Vibrio cholerae B33
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153820740, gi....

Description	E-value	Query Range	Subject Range
gi\|229605699, gi... - gi\|229605699\|ref\|YP_002876403.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae MJ-... gi\|229528494, gi... - gi\|229528494\|ref\|ZP_04417885.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae 1212... tr\|C6YI31\|C6YI31... - Periplasmic nitrate reductase, electron transfer subunit OS=Vibrio cholerae MO10 GN=VchoM_01984 PE=3... gi\|116217345, gi... - gi\|75824128\|ref\|ZP_00753593.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|75831688, gi\|... - gi\|75831688\|ref\|ZP_00760949.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|75817116 - gi\|75817116\|ref\|ZP_00747570.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|75818866, gi\|... - gi\|75818866\|ref\|ZP_00748982.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|121585598, gi... - gi\|121585598\|ref\|ZP_01675394.1\| periplasmiC nitrate reductase, diheme cytochrome c subunit [Vibrio c... gi\|229509982, gi... - gi\|229509982\|ref\|ZP_04399462.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae B33]... gi\|124120505, gi... - gi\|153219945\|ref\|ZP_01951514.1\| periplasmiC nitrate reductase, diheme cytochrome c subunit [Vibrio c... gi\|229356511, gi... - gi\|229506160\|ref\|ZP_04395669.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae BX 3... gi\|229522247, gi... - gi\|229522247\|ref\|ZP_04411663.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae TM 1... gi\|229346338, gi... - gi\|229516457\|ref\|ZP_04405904.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae RC9]...	264.0	[0..21]	[171..1]
gi\|75825494 - gi\|75825494\|ref\|ZP_00754930.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae...	262.0	[0..21]	[171..1]
gi\|37201397, gi\|... - gi\|37676853\|ref\|NP_937249.1\| nitrate reductase cytochrome c-type subunit [Vibrio vulnificus YJ016], ...	260.0	[0..20]	[171..1]
gi\|91190894, gi\|... - gi\|91223983\|ref\|ZP_01259246.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio algi...	257.0	[0..20]	[171..1]
gi\|28901055, gi\|... - gi\|28901055\|ref\|NP_800710.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio paraha... gi\|28809568 - gi\|28809568\|dbj\|BAC62543.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio parahae...	256.0	[0..21]	[171..1]
gi\|116187423, gi... - gi\|75856263\|ref\|ZP_00763894.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio sp. Ex25...	256.0	[0..20]	[171..1]
gi\|27367140, gi\|... - gi\|27367140\|ref\|NP_762667.1\| nitrate reductase cytochrome c-type subunit [Vibrio vulnificus CMCP6], ...	252.0	[0..21]	[171..1]
gi\|59712511, gi\|... - gi\|59712511\|ref\|YP_205287.1\| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Vibrio ...	247.0	[0..21]	[171..1]
gi\|84387476, gi\|... - gi\|84387476\|ref\|ZP_00990495.1\| cytochrome c-type protein NapB [Vibrio splendidus 12B01], gi\|84377729...	233.0	[0..21]	[171..1]
gi\|86146698, gi\|... - gi\|86146698\|ref\|ZP_01065019.1\| cytochrome c-type protein NapB [Vibrio sp. MED222], gi\|85835545\|gb\|EA... gi\|218324640, gi... - gi\|218676372\|ref\|YP_002395191.1\| cytochrome c-type protein [Vibrio splendidus LGP32], gi\|218324640\|e...	232.0	[0..21]	[171..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWAARQPRP SIKPQGGEFT MKKQLIALLS VFTVLAGIAH AELNNPGGIG GLESLRGATE  60
   61 IEATRAADPM KKYPREQALE SDFVYQPPLI PHNIRNYEVS LNANKCLACH SWKNAKEMGA 120
  121 TKISVTHFVN REDAVLSDVS PRRYFCLQCH VPQADAKPLV ENDFERVDSL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1ogyB
Description:	Crystal structure of the heterodimeric nitrate reductase from Rhodobacter sphaeroides
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	12.7591230788202	bayes_pls_golite062009
nitrate reductase activity	11.6275376808252	bayes_pls_golite062009
catalytic activity	0.202301774983557	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: