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View Structure Prediction Details

Protein: gi|125620828, gi...
Organism: Vibrio cholerae V51
Length: 101 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125620828, gi....

Description E-value Query
Range
Subject
Range
gi|46908544, gi|... - gi|46908544|ref|YP_014933.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...
145.0 [0..1] [101..1]
gi|47095852, gi|... - gi|47095852|ref|ZP_00233456.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogene...
gi|127764552, gi... - gi|153192012|ref|ZP_01939078.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...
gi|133731868, gi... - gi|153180475|ref|ZP_01933518.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...
gi|153175605, gi... - gi|153175605|ref|ZP_01930933.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...
143.0 [0..1] [101..42]
gi|28899411, gi|... - gi|28899411|ref|NP_799016.1| PTS system, cellobiose-specific IIB component [Vibrio parahaemolyticus ...
gi|198278122, gi... - gi|28807647|dbj|BAC60900.1| PTS system, cellobiose-specific IIB component [Vibrio parahaemolyticus R...
140.0 [0..1] [101..1]
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P...
PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ...
gi|221321063 - gi|221321063|ref|ZP_03602357.1| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...
gi|221325348 - gi|221325348|ref|ZP_03606642.1| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...
gi|221316152 - gi|221316152|ref|ZP_03597957.1| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...
140.0 [0..3] [99..2]
gi|224500607 - gi|224500607|ref|ZP_03668956.1| hypothetical protein LmonF1_13411 [Listeria monocytogenes Finland 19...
gi|224503738 - gi|224503738|ref|ZP_03672045.1| hypothetical protein LmonFR_14764 [Listeria monocytogenes FSL R2-561...
gi|16804411 - gi|16804411|ref|NP_465896.1| hypothetical protein lmo2373 [Listeria monocytogenes EGD-e]
gi|16411861, gi|... - pir||AE1371 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component homolog lmo...
gi|254826366 - gi|254826366|ref|ZP_05231367.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254829562 - gi|254829562|ref|ZP_05234249.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|226224923, gi... - gi|226224923|ref|YP_002759030.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB ...
gi|254901165 - gi|254901165|ref|ZP_05261089.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254914048 - gi|254914048|ref|ZP_05264060.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254854476 - gi|254854476|ref|ZP_05243824.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254880423 - gi|254880423|ref|ZP_05253133.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254992401 - gi|254992401|ref|ZP_05274591.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|255521508 - gi|255521508|ref|ZP_05388745.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254933430 - gi|254933430|ref|ZP_05266789.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
gi|254938363 - gi|254938363|ref|ZP_05270060.1| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...
139.0 [0..1] [101..1]
gi|89086742, gi|... - gi|89098497|ref|ZP_01171380.1| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...
139.0 [0..3] [101..21]
gi|46917091, gi|... - gi|54303660|ref|YP_133653.1| PTS system cellobiose-specific IIB component [Photobacterium profundum ...
138.0 [0..1] [101..26]
gi|37199835, gi|... - gi|37681085|ref|NP_935694.1| phosphotransferase system cellobiose-specific component IIB [Vibrio vul...
138.0 [0..1] [101..2]
gi|150019349, gi... - gi|82746001|ref|ZP_00908510.1| similar to cellobiose phosphotransferase enzyme IIB component [Clostr...
138.0 [0..1] [100..1]
gi|47017094, gi|... - gi|47094531|ref|ZP_00232197.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogene...
138.0 [0..1] [101..26]

Back

Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILLCCSA GMSTSMLVKK MQQAAESKGI ECKIDALSVN AFEEAIQEYD VCLLGPQVRF  60
   61 QLEELRKTAD EYGKNIAAIS PQAYGMMKGD EVLQQALDLI N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 1h9cA
Description: Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity 5.08041453921791 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 4.49138214292642 bayes_pls_golite062009
glucoside transmembrane transporter activity 1.83892097143526 bayes_pls_golite062009
sugar transmembrane transporter activity 1.77053981674308 bayes_pls_golite062009
transporter activity 1.6837050020547 bayes_pls_golite062009
transmembrane transporter activity 1.5685227361887 bayes_pls_golite062009
substrate-specific transporter activity 1.32293422112884 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.217268678967 bayes_pls_golite062009
active transmembrane transporter activity 1.12964417923438 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 0.71593290802554 bayes_pls_golite062009
catalytic activity 0.676259875978821 bayes_pls_golite062009
beta-glucoside transmembrane transporter activity 0.50967675887857 bayes_pls_golite062009
binding 0.472595683811139 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.37663629577414 bayes_pls_golite062009
fructose transmembrane transporter activity 0.225562559709031 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.0296784994545702 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle