YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|118418948, gi...
Organism:	Bacillus thuringiensis str. Al Hakam
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|118418948, gi....

Description	E-value	Query Range	Subject Range
gi\|56381095, gi\|... - gi\|56421253\|ref\|YP_148571.1\| translation initiation factor IF-3 [Geobacillus kaustophilus HTA426], g...	2.0E-70	[5..192]	[48..235]
gi\|65321943 - gi\|65321943\|ref\|ZP_00394902.1\| COG0290: Translation initiation factor 3 (IF-3) [Bacillus anthracis s... gi\|47778330, gi\|... - gi\|47778330\|ref\|YP_021465.2\| translation initiation factor IF-3 [Bacillus anthracis str. 'Ames Ances... gi\|30259320, gi\|... - gi\|30264645\|ref\|NP_847022.1\| translation initiation factor IF-3 [Bacillus anthracis str. Ames], gi\|3...	3.0E-68	[10..195]	[1..186]
gi\|71369942, gi\|... - gi\|71369942\|ref\|ZP_00660335.1\| Initiation factor 3 [Nocardioides sp. JS614], gi\|71154334\|gb\|EAO04868...	5.0E-68	[18..195]	[123..302]
gi\|25299569 - gi\|25299569\|pir\|\|D84042 translation initiation factor IF-3 infC [imported] - Bacillus halodurans (st... gi\|15615702, gi\|... - gi\|15615702\|ref\|NP_244006.1\| translation initiation factor IF-3 [Bacillus halodurans C-125], gi\|1017...	5.0E-68	[6..195]	[1..190]
gi\|85702892, gi\|... - gi\|85702892\|ref\|ZP_01033996.1\| translation initiation factor [Roseovarius sp. 217], gi\|85671820\|gb\|E...	8.0E-67	[17..194]	[41..219]
gi\|114537328, gi... - gi\|114707132\|ref\|ZP_01440030.1\| translation initiation factor IF-3 [Fulvimarina pelagi HTCC2506], gi...	1.0E-66	[10..192]	[33..216]
gi\|52786765, gi\|... - gi\|52786765\|ref\|YP_092594.1\| translation initiation factor IF-3 [Bacillus licheniformis ATCC 14580],...	1.0E-66	[20..195]	[36..211]
gi\|126461362, gi... - gi\|83371706\|ref\|ZP_00916486.1\| Initiation factor 3 [Rhodobacter sphaeroides ATCC 17029], gi\|83366028... gi\|77386903, gi\|... - gi\|77462485\|ref\|YP_351989.1\| translation initiation factor IF-3 [Rhodobacter sphaeroides 2.4.1], gi\|...	2.0E-65	[6..192]	[5..194]
gi\|25028065, gi\|... - gi\|25028065\|ref\|NP_738119.1\| translation initiation factor IF-3 [Corynebacterium efficiens YS-314], ...	3.0E-65	[10..194]	[38..222]
IF3_STRAW - Translation initiation factor IF-3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM ... IF3_STRAW - Translation initiation factor IF-3 OS=Streptomyces avermitilis GN=infC PE=3 SV=1	5.0E-65	[19..195]	[3..179]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALFLSGSM TTNYVLRKPW RWLTISKDMM INEQIRAREV RLVGANGDQL GIKSRNDALD  60
   61 LAANLNLDLV LVAPNAKPPV CRIMDYGKFR FEQQKKEKEQ RKNQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1tifA
Description:	TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation initiation factor activity	5.47485713101079	bayes_pls_golite062009
translation regulator activity	1.62528736558737	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.60662288414996	bayes_pls_golite062009
binding	1.47561914415547	bayes_pls_golite062009
nucleic acid binding	1.12320467511263	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [106-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VISMKEVRLS PTIDEHDFNT KLRNAIKFLE KGDKVKASIR FKGRAITHKE IGQRVLDRFS  60
   61 EACAEVSTIE SKPKMEGRSM FLVLAPKNDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1tigA
Description:	TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation initiation factor activity	8.09269133854598	bayes_pls_golite062009
translation regulator activity	4.19718241948497	bayes_pls_golite062009
translation factor activity, nucleic acid binding	4.18160226822061	bayes_pls_golite062009
nucleic acid binding	3.21583663075334	bayes_pls_golite062009
binding	2.86350131209009	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: