YRC Public Data Repository - Protein Structure Prediction

Protein:	CCL4_RAT
Organism:	Rattus norvegicus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL4_RAT.

Description	E-value	Query Range	Subject Range
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	127.0	[0..1]	[92..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	124.0	[0..1]	[92..1]
CCL4_BOVIN - C-C motif chemokine 4 OS=Bos taurus GN=CCL4 PE=3 SV=1	122.0	[0..1]	[92..1]
CCL3L1, CCL3L3 - chemokine (C-C motif) ligand 3-like 3, chemokine (C-C motif) ligand 3-like 1	121.0	[0..1]	[92..1]
gi\|55646301 - gi\|55646301\|ref\|XP_511774.1\| PREDICTED: chemokine (C-C motif) ligand 4-like 2 [Pan troglodytes]	121.0	[0..1]	[92..1]
gi\|30584489, gi\|... - gi\|60653245\|gb\|AAX29317.1\| chemokine (C-C motif) ligand 3-like 1 [synthetic construct], gi\|60653243\|...	119.0	[0..1]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLCVSAFSL LLLVAAFCDS VLSAPIGSDP PTSCCFSYTS RKIHRNFVMD YYETSSLCSQ  60
   61 PAVVFLTKKG RQICADPSEP WVNEYVNDLE LN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1humA
Description:	Macrophage inflammatory protein, MIP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits