YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|123984687, gi...
Organism: synthetic construct
Length: 619 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123984687, gi....

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
3.0E-55 [2..573] [718..1294]
gi|114640436 - gi|114640436|ref|XP_001152604.1| PREDICTED: BUD13 homolog isoform 2 [Pan troglodytes]
7.0E-55 [1..619] [1..619]
gi|76635260 - gi|76635260|ref|XP_587442.2| PREDICTED: similar to CG13625-PA isoform 1 [Bos taurus]
9.0E-49 [1..619] [1..624]
BUD13_RAT - BUD13 homolog OS=Rattus norvegicus GN=Bud13 PE=1 SV=1
1.0E-48 [1..619] [1..636]
BUD13_MOUSE - BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1
2.0E-48 [1..619] [1..637]
gi|73954731 - gi|73954731|ref|XP_850329.1| PREDICTED: similar to CG13625-PA isoform 2 [Canis familiaris]
6.0E-47 [1..619] [1..625]

Back

Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAPPLSKA EYLKRYLSGA DAGVDRGSES GRKRRKKRPK PGGAGGKGMR IVDDDVSWTA  60
   61 ISTTKLEKEE EEDDGDLPVV AEFVDERPEE VKQMEAFRSS AKWKLLGGHN EDLPSNRHFR 120
  121 HDTPDSSPRR VRHGTPDPSP RKDRHDTPDP SPRRARHDTP DPSPLRGARH DSDTSPPRRI 180
  181 RHDSSDTSPP RRARHDSPDP SPPRRPQHNS SGASPRRVRH DSPDPSPPRR ARH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSDISSPRR VHNNSPDTSR RTLGSSDTQQ LRRARHDSPD LAPNVTYSLP RTKSGKAPER  60
   61 ASSKTSPHWK ESGASHLSFP KNSKYEYDPD ISPPRKKQAK SHFGDKKQLD SKGDCQKATD 120
  121 SDLSSPRHKQ SPGHQDSDSD LSPPRN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [380-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPRHRSSDSD LSPPRRRQRT KSSDSDLSPP RRSQPPGKKA AHMYSGAKTG LVLTDIQREQ  60
   61 QELKEQDQET MAFEAEFQYA ETVFRDKSGR KRNLKLERLE QRRKAEKDSE RDELYAQWGK 120
  121 GLAQSRQQQQ NVEDAMKEMQ KPLARYIDDE DLDRMLREQE REGDPMANFI KKNKAKENKN 180
  181 KKVRPRYSGP APPPNRFNIW PGYRWDGVDR SNGFEQKRFA RLASKKAVEE LAYKWSVEDM 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle