YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117616480
Organism:	synthetic construct
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117616480.

Description	E-value	Query Range	Subject Range
gi\|27542785 - gi\|27542785\|gb\|AAO16875.1\| PAP2A-GFP fusion protein [synthetic construct]	298.0	[0..1]	[284..1]
PLPP1_MOUSE - Phospholipid phosphatase 1 OS=Mus musculus GN=Plpp1 PE=1 SV=1	276.0	[0..1]	[284..1]
gi\|29171738, gi\|... - gi\|29171738\|ref\|NP_795714.1\| phosphatidic acid phosphatase type 2A isoform 2 [Homo sapiens], gi\|1195...	273.0	[0..1]	[284..1]
gi\|114600250 - gi\|114600250\|ref\|XP_001146001.1\| PREDICTED: phosphatidic acid phosphatase type 2A isoform 2 [Pan tro...	273.0	[0..1]	[284..1]
gi\|3641336 - gi\|3641336\|gb\|AAC63334.1\| phosphatidic acid phosphatase 2a2 [Cavia porcellus]	268.0	[0..1]	[284..1]
gi\|122692411, gi... - gi\|81674095\|gb\|AAI09902.1\| Phosphatidic acid phosphatase type 2A [Bos taurus], gi\|122692411\|ref\|NP_0...	267.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVICVLLA AMPMTILKLG KVYPFQRGFF CTDNSVKYPY HDSTIPSRIL  60
   61 AILGLGLPI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSMSIGESLS VYFNVLHSNS FVGNPYIATI YKAVGAFLFG VSASQSLTDI AKYTIGSLRP  60
   61 HFLAICNPDW SKINCSDGYI EDYICQGNEE KVKEGRLSFY SGHSSFSMYC MLFVALYLQA 120
  121 RMKGDWARLL RPMLQFGLIA FSIYVGLSRV SDYKHHWSDV TVGLIQGAAM AILVALYVSD 180
  181 FFKDTHSYKE RKEEDPHTTL HETASSRNYS TNHEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.30103
Match:	2akcA
Description:	No description for 2akcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits