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View Structure Prediction Details

Protein: gi|129562652
Organism: Oryza sativa Indica Group
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|129562652.

Description E-value Query
Range
Subject
Range
CHLG_AVESA - Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1
219.0 [0..1] [376..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSHLLAAA SSTAASSATF RPPLLSLRSP PPSSLRLNRR RHFQVVRAAE TDKETKANAP  60
   61 EKAPAGGSSF NQLLGIKGAK 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 2iw5B
Description: No description for 2iw5B was found.

Predicted Domain #2
Region A:
Residues: [81-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QENDIWKIRL QLTKPVTWPP LVWGVLCGAA ASGNFHWTVE DVAKSIVCMI MSGPCLTGYT  60
   61 QTINDWYDRD IDAINEPYRP IPSGAISENE VITQIWALLL AGLGLGALLD VWAGHD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [197-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPIIFYLAVG GSLLSYIYSA PPLKLKQNGW IGNFALGASY IGLPWWAGQA LFGTLTPDIV  60
   61 VLTSLYSIAG LGIAIVNDFK SVEGDRALGL QSLPVAFGME TAKWICVGAI DITQLSVAGY 120
  121 LFSSGKPYYA LALLGLTIPQ VVFQFQYFLK DPVKYDVKYQ ASAQPFFVLG LLVTALATSH 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle