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View Structure Prediction Details

Protein: gi|116310213
Organism: Oryza sativa Indica Group
Length: 438 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116310213.

Description E-value Query
Range
Subject
Range
RUS2_ARATH - Protein root UVB sensitive 2, chloroplastic OS=Arabidopsis thaliana GN=RUS2 PE=1 SV=2
483.0 [0..23] [429..26]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILERIRGG GDRAAVGEGP REPEPWVEIS ESISRLCSFD AGRVSVKVIQ DSRPIHDKMI  60
   61 DSFLNKFFPS GYPYSVNEGY LTYTKFRALQ HFSSAMLHVL STQSLLFAAG LRPTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQATAVSWIL KDGMQHAGKL ICSGMGARMD SEPKSWRILA DVLYDFGTAL EVISPLCPQL  60
   61 FLEVAGFGNF AKGMAVVAAR ATRLPIYSSF AKEGNLSDLF AKGEAISTLF NVMGIGAGIG 120
  121 LASTVCSTTQ GKLIAGPLLS VVHIYGVVQE MRATPVNTLN PQRTAMIVAD FIKSGKVSSP 180
  181 AELRYREDLL FPNRLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEAGSVKIGQ PVRRVLSPQR IEQLKATFSK EKFLLSRKDN SAYMVLEQSA TGEDALRGWL  60
   61 VAAFASEMER SGVGSGDTVL NVAYERMENV FPMFVAEVKS RGWYTDQFLD GNRSRIAYAN 120
  121 PISGSAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle