YRC Public Data Repository - Protein Structure Prediction

Protein:	CST8_RAT
Organism:	Rattus norvegicus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CST8_RAT.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	152.0	[0..1]	[141..1]
CYTC_MACMU - Cystatin-C OS=Macaca mulatta GN=CST3 PE=2 SV=1	150.0	[0..20]	[141..24]
gi\|58081 - gi\|58081\|emb\|CAA31253.1\| ompA - cystatin C fusion preprotein (AA -21 to 120) [synthetic construct]	149.0	[0..3]	[141..2]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	148.0	[0..20]	[141..24]
CST3 - cystatin C HGNC:2475\|MIM:60... - C, C gi\|61360748, gi\|... - gi\|61360752\|gb\|AAX41919.1\| cystatin C [synthetic construct], gi\|61360748\|gb\|AAX41918.1\| cystatin C [...	146.0	[0..20]	[141..24]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPLLLSLI FFIIPAALAV DVDQSKNEVK AQRYFGSISI SNANVKQCVW FAMKEYNKGS  60
   61 EDKYLFLLDK TLHATLQITD RMEYHIDVQI SRSNCRKPLN NTENCIPQKN PKLEKKLSCS 120
  121 FLVGALPWNG EFDLLSKECK DV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits