YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5565-PA
Organism:	Drosophila melanogaster
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5565-PA.

Description	E-value	Query Range	Subject Range
gi\|198475358, gi... - gi\|198475358\|ref\|XP_002132892.1\| GA25358 [Drosophila pseudoobscura pseudoobscura], gi\|198138786\|gb\|E... gi\|125986525, gi... - gi\|54645352\|gb\|EAL34092.1\| GA18974 [Drosophila pseudoobscura pseudoobscura], gi\|125986525\|ref\|XP_001...	176.0	[0..1]	[240..1]
gi\|157817676, gi... - gi\|27681499\|ref\|XP_225938.1\| PREDICTED: similar to haloacid dehalogenase-like hydrolase domain [Ratt...	172.0	[0..3]	[232..6]
gi\|241884351, gi... - gi\|241903285\|ref\|ZP_04788011.1\| HAD-superfamily hydrolase, subfamily IA, variant 3 [Thermoanaerobact... gi\|242258243, gi... - gi\|242258243\|ref\|ZP_04803066.1\| HAD-superfamily hydrolase, subfamily IA, variant 3 [Thermoanaerobact... gi\|166853930, gi... - gi\|167039690\|ref\|YP_001662675.1\| HAD family hydrolase [Thermoanaerobacter sp. X514], gi\|166853930\|gb... gi\|76589066, gi\|... - gi\|76795752\|ref\|ZP_00778124.1\| HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hy...	169.0	[0..10]	[228..2]
gi\|91083337 - gi\|91083337\|ref\|XP_974977.1\| PREDICTED: similar to 2-deoxyglucose-6-phosphate phosphatase [Tribolium...	168.0	[0..6]	[231..11]
gi\|20808387 - gi\|20808387\|ref\|NP_623558.1\| predicted phosphatase/phosphohexomutase [Thermoanaerobacter tengcongens... gi\|254479378, gi... - gi\|254479378\|ref\|ZP_05092713.1\| haloacid dehalogenase-like hydrolase, putative [Carboxydibrachium pa... gi\|20517000, gi\|... - gi\|20808387\|ref\|NP_623558.1\| phosphatase/phosphohexomutase [Thermoanaerobacter tengcongensis MB4], g...	167.0	[0..10]	[230..2]
Gs1l-PA - The gene GS1-like is referred to in FlyBase by the symbol Dmel\Gs1l (CG15441, FBgn0019982). It is a ... gi\|220952154 - gi\|220952154\|gb\|ACL88620.1\| Gs1l-PA [synthetic construct]	166.0	[0..7]	[233..6]
gi\|110289212 - gi\|110289212\|gb\|ABG66125.1\| HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, e...	165.0	[0..2]	[233..3]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTKKCYCPV THVIFDCDGT LIDSEGIYLK TVQDLLAKYG KTYTKVDQTQ HMGMPVGTFS  60
   61 QHIVKDLKLP LSPAEFQKEF EAAVDKSMGS VALLPGVRDL ILHLHEYRIP FCIATSSFRK 120
  121 LFKVKAESFK DIFLAFHHVV CGDDPALGPG RGKPYPDIYL LAASRFNPPA DPKKCLIFED 180
  181 APVGLIGGKA AGSQVIFIPT DNVSKQQKKG ATMVLKSMAD FKPELFGLPP FDTCSKFEFG 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	2pibA
Description:	No description for 2pibA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits