YRC Public Data Repository - Protein Structure Prediction

Protein:	CG31953-PA
Organism:	Drosophila melanogaster
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG31953-PA.

Description	E-value	Query Range	Subject Range
gkt-PA - The gene glaikit is referred to in FlyBase by the symbol Dmel\gkt (CG8825, FBgn0260817). It is a pro... gi\|220946228 - gi\|220946228\|gb\|ACL85657.1\| gkt-PA [synthetic construct]	271.0	[0..12]	[210..402]
gi\|54644254\|gb\|E... - GA21349-PA [Drosophila pseudoobscura], GA28884 [Drosophila pseudoobscura pseudoobscura] gi\|54644254, gi\|... - gi\|54644254\|gb\|EAL32995.1\| GA28884 [Drosophila pseudoobscura pseudoobscura], gi\|125984342\|ref\|XP_001...	260.0	[0..12]	[210..398]
gi\|40796186 - gi\|40796186\|gb\|AAH65162.1\| Tdp1 protein [Mus musculus]	237.0	[0..12]	[206..419]
gi\|49258603, gi\|... - gi\|49258604\|pdb\|1QZQ\|B Chain B, Human Tyrosyl Dna Phosphodiesterase, gi\|49258603\|pdb\|1QZQ\|A Chain A,...	236.0	[0..12]	[206..293]
gi\|109084583, gi... - gi\|109084587\|ref\|XP_001089775.1\| PREDICTED: similar to tyrosyl-DNA phosphodiesterase 1 isoform 8 [Ma...	235.0	[0..12]	[206..413]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPAVTPHL ADFVNSLKKD STPVGKLRQM PPFKMIYPSY GNVAGSHDGM LGGGCLPYGK  60
   61 NTNDKQPWLK DYLQQWKSSD RFRSRAMPHI KSYTRFNLED QSVYWFVLTS ANLSKAAWGC 120
  121 FNKNSNIQPC LRIANYEAGV LFLPRFVVGL VRFLNQSPLQ LVLFAFQTGE DTFPLGNNRD 180
  181 GVPAFPLPYD VPLTPYAPDD KPFLMDYLQG

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Detection Method:	PSI-BLAST
Confidence:	62.39794
Match:	1qzqA
Description:	human Tyrosyl DNA phosphodiesterase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits