YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0304499, pim-PA
Organism:	Drosophila melanogaster
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0304499, pim-PA.

Description	E-value	Query Range	Subject Range
gi\|34452191 - gi\|34452191\|gb\|AAQ72550.1\| pimples [Drosophila orena]	374.0	[0..1]	[199..1]
gi\|190661329, gi... - gi\|34452203\|gb\|AAQ72556.1\| pimples [Drosophila erecta], gi\|194859847\|ref\|XP_001969462.1\| pim [Drosop...	365.0	[0..1]	[199..1]
gi\|34452193 - gi\|34452193\|gb\|AAQ72551.1\| pimples [Drosophila yakuba]	360.0	[0..1]	[199..1]
gi\|34452195 - gi\|34452195\|gb\|AAQ72552.1\| pimples [Drosophila pseudoobscura]	293.0	[0..1]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQILNKENT GINLPANPIK NGVPTNSVLK KPLGNLDNVM HQTPGITPFK STSLKLEGSI  60
   61 AKLSLRKAPK QNVVSRDREE VRYKTNSCFL GAYVLNCEYR VVNLFNYTDF PNEKCLKNCS 120
  121 KPVTETWSEN QEGYEGLLDQ LYLDLRTLEN NLENRCLPPL DFTDLPYIYN TENMEPAEPE 180
  181 YLLNLYPPLP NLEGIDVLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits