YRC Public Data Repository - Protein Structure Prediction

Protein:	Ast-C-PA
Organism:	Drosophila melanogaster
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ast-C-PA.

Description	E-value	Query Range	Subject Range
Ast-C-PB - The gene Allatostatin C is referred to in FlyBase by the symbol Dmel\Ast-C (CG14919, FBgn0032336). I...	200.0	[0..1]	[122..1]
gi\|195148302, gi... - gi\|195148302\|ref\|XP_002015113.1\| GL18596 [Drosophila persimilis], gi\|194107066\|gb\|EDW29109.1\| GL1859... gi\|54645107, gi\|... - gi\|54645107\|gb\|EAL33847.1\| GA13352 [Drosophila pseudoobscura pseudoobscura], gi\|125986035\|ref\|XP_001... gi\|54645107\|gb\|E... - GA13352-PA [Drosophila pseudoobscura], GA13352 [Drosophila pseudoobscura pseudoobscura]	182.0	[0..1]	[122..1]
gi\|108878527, gi... - gi\|157111083\|ref\|XP_001651381.1\| hypothetical protein AaeL_AAEL005747 [Aedes aegypti], gi\|108878527\|...	123.0	[0..31]	[122..26]
gi\|116118464, gi... - gi\|119114538\|ref\|XP_319324.3\| ENSANGP00000012635 [Anopheles gambiae str. PEST], gi\|119114536\|ref\|XP_...	106.0	[0..41]	[122..8]
ALLS_SPOFR - Allatostatin OS=Spodoptera frugiperda GN=ast PE=2 SV=1	51.0	[0..14]	[122..16]
gi\|67527239 - gi\|67527239\|gb\|AAY68369.1\| allatostatin [Samia cynthia ricini]	51.0	[0..90]	[122..88]
gi\|1244518 - gi\|1244518\|gb\|AAA93257.1\| allatostatin neuropeptide precursor [Pseudaletia unipuncta]	50.0	[0..104]	[122..107]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKFVQILLC YGLLLTLFFA LSEARPSGAE TGPDSDGLDG QDAEDVRGAY GGGYDMPAQA  60
   61 IYPNIPMDRL QMLFAQYRPT SYSAYLRSPT YGNVNELYRL PESKRQVRYR QCYFNPISCF 120
  121 RK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.356	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.309	a.112.1	Description not found.
View	Download	0.308	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.300	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.286	d.93.1	SH2 domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits