YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224487990
Organism:	Drosophila melanogaster
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224487990.

Description	E-value	Query Range	Subject Range
gi\|114636591 - gi\|114636591\|ref\|XP_508270.2\| PREDICTED: hypothetical protein LOC451007 [Pan troglodytes]	315.0	[0..5]	[282..105]
gi\|88954789, gi\|... - gi\|88954789\|ref\|XP_947182.1\| PREDICTED: similar to eukaryotic translation initiation factor 3, subun...	309.0	[0..5]	[282..90]
gi\|62641108, gi\|... - gi\|62641108\|ref\|XP_215037.3\| PREDICTED: similar to eukaryotic translation initiation factor 3, subun...	308.0	[0..5]	[282..90]
gi\|61369601, gi\|... - gi\|61369601\|gb\|AAX43358.1\| eukaryotic translation initiation factor 3 subunit 5 epsilon [synthetic c...	308.0	[0..5]	[282..86]
gi\|109107398 - gi\|109107398\|ref\|XP_001105893.1\| PREDICTED: similar to eukaryotic translation initiation factor 3, s... EIF3F_MACFA - Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1	307.0	[0..5]	[282..90]
gi\|61816288 - gi\|61816288\|ref\|XP_591540.1\| PREDICTED: similar to translation initiation factor 3 47 kDa subunit is...	305.0	[0..5]	[282..98]
gi\|74207432 - gi\|74207432\|dbj\|BAE30896.1\| unnamed protein product [Mus musculus]	302.0	[0..5]	[282..90]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNFSMRAK VYLKPLVFFQ IIDAYDRRPK GDNQVMGTLL GRNKEGHIEI TNCFTVPHKE  60
   61 HSENKRIDLD MAYASEVLEL NMFAYPNERV LGWFCTGKSV SRSASLIHDY YVRECCEGQP 120
  121 LHLLVDAALK NQRLSTRLYC AVEMGVPGGT KGLMFSLVPL EISNENSDLV ALRCIEKQSQ 180
  181 QQASKQMERF VPELAQVVDA TRDMQHRLDL VLRYINDVLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [221-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKKKPDNVVG RSLYAALTAV PLLDSDKFRV MFNTNLRDML MAITLSTMIK TQLEISEKLS  60
   61 CMQDQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits