YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: sre-15
Organism: Caenorhabditis elegans
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sre-15.

Description E-value Query
Range
Subject
Range
CE16768 - WBGene00015036 status:Partially_confirmed TR:O45066 protein_id:AAC02567.1
168.0 [0..1] [318..26]

Back

Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVLRFDRN EAVENGTIEI FSLIFKLEIT ANFIGILYYM LNVCIDYRTR GSMNNIRRIH  60
   61 QFVYVTCPIN HIVFIVEKIL IIWDFKEGFM CLPAYAIERS LATYFLHDYE KENRSYIGYT 120
  121 MSFLIYLISI ISVLVCTQFS TTFYPFLVLF MSNIISYIVN IINYKLNRYY YNCSLRKLHT 180
  181 YSLTERYQIS ENIQFAKFFH IFALTVAVFA TVCSLLLMLT SLSFTASEKN IFLLSFDTIY 240
  241 TIFILVCPYL HYKNNTTWQH EFKKCLKLYT SEVKCSSLAI GKPSLQLKTT FGERMNVGKN 300
  301 VQTDVYFSQL TNSWNTTKPN NIPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle