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View Structure Prediction Details

Protein: hsp-12.1
Organism: Caenorhabditis elegans
Length: 112 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-12.1.

Description E-value Query
Range
Subject
Range
gi|92886153 - gi|92886153|gb|ABE88158.1| Heat shock protein Hsp20 [Medicago truncatula]
111.0 [0..1] [110..21]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTIPITTDS AASWDWPLQH NDGVVKVTNT SEKFEVGLDA GFFGPNDIDV KVNGIEIIIH  60
   61 LRHDLLQNRP TEYGIVNREV HRTYKLPEDV DPSTVRSHLN SSGVLTITAN KL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1gmeA
Description: Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.899294246597615 bayes_pls_golite062009
protein binding 0.766194779819271 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle