YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Pbp49-PA, Pbp49-PB
Organism: Drosophila melanogaster
Length: 377 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pbp49-PA, Pbp49-PB.

Description E-value Query
Range
Subject
Range
SNPC3_MACFA - snRNA-activating protein complex subunit 3 OS=Macaca fascicularis GN=SNAPC3 PE=2 SV=1
gi|109111491 - gi|109111491|ref|XP_001110647.1| PREDICTED: similar to small nuclear RNA activating complex, polypep...
428.0 [0..42] [359..98]

Back

Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTYITTNP ALSLRDFLAD YQKKISGTAD EVPFFLQKNP VLVDVSESCS LDLIESPDDS  60
   61 SIAVFQPAAD KCRPTFSPPQ ENQHVPSTFT ALSQHKDKSR KCPFGRTQYS HKLNPTPTDS 120
  121 PNLHIDACGE LELTVRLYRP PRAYHRGFKV EIPVFAEEFV CLGSNYLTEL RDKISCVCNG 180
  181 KRFVDISDDP DAPLPSIDT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPGYFFINDT FYNDQRNPDN PDYSKTVLQW AARANGVNGE TLKVESMEGK RFIDLTVSPG  60
   61 SPLHYLHHGN CEHLFVISQV EVLTPLSKRP DRSLY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [295-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYPHAFSTFN RRTCYMCGIR SYSFIVNQSR RQLHDPSYLC RRCFLSFFYV DGVKLGQFKA  60
   61 YRMYDHVELE GEEEDIKQQN LPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle