YRC Public Data Repository - Protein Structure Prediction

Protein:	ox-PA
Organism:	Drosophila melanogaster
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ox-PA.

Description	E-value	Query Range	Subject Range
gi\|85117812 - gi\|85117812\|ref\|XP_965333.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28927140, gi\|... - gi\|32420451\|ref\|XP_330669.1\| predicted protein [Neurospora crassa], gi\|28927140\|gb\|EAA36097.1\| predi...	94.0	[0..6]	[54..48]
gi\|39969991, gi\|... - gi\|39969991\|ref\|XP_366386.1\| hypothetical protein MG10604.4 [Magnaporthe grisea 70-15], gb\|EAA57532....	93.0	[0..7]	[54..417]
QCR9_MOUSE - Cytochrome b-c1 complex subunit 9 OS=Mus musculus GN=Uqcr10 PE=1 SV=1	92.0	[0..4]	[55..10]
gi\|194043200, gi... - gi\|87047640\|gb\|ABD18453.1\| ubiquinol-cytochrome c reductase complex [Sus scrofa], gi\|194043200\|ref\|X...	89.0	[0..4]	[55..10]
gi\|116182520, gi... - gi\|88186185\|gb\|EAQ93653.1\| predicted protein [Chaetomium globosum CBS 148.51], gi\|116182520\|ref\|XP_0...	89.0	[0..1]	[54..24]
QCR9_BOVIN - Cytochrome b-c1 complex subunit 9 OS=Bos taurus GN=UQCR10 PE=1 SV=3	89.0	[0..4]	[55..10]
gi\|5822466, gi\|3... - gi\|5822466\|pdb\|2BCC\|J Chain J, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken, gi\|3660384\|pd...	88.0	[0..4]	[55..9]
gi\|149720294 - gi\|149720294\|ref\|XP_001498795.1\| PREDICTED: similar to ubiquinol-cytochrome c reductase complex [Equ... gi\|73994981 - gi\|73994981\|ref\|XP_852402.1\| PREDICTED: similar to ubiquinol-cytochrome c reductase complex 7.2kDa p...	87.0	[0..4]	[55..10]
gi\|149047568, gi... - gi\|187960180\|gb\|AAI66935.1\| LOC685322 protein [Rattus norvegicus], gi\|149047568\|gb\|EDM00238.1\| rCG36...	87.0	[0..4]	[55..10]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIYNTLFK RTSTYAVAII ASAFFFERAL DVTSVAIFEG INKGKLWKDI KGKYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1be3J
Description:	Subunit X (nonheme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.4233708879266	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.4233708879266	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.02819078579896	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.49966228892074	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.34892457921063	bayes_pls_golite062009
oxidoreductase activity	4.79573172758254	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.75909017447917	bayes_pls_golite062009
cation transmembrane transporter activity	4.52463184109793	bayes_pls_golite062009
ion transmembrane transporter activity	4.3345937506905	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.94101064926447	bayes_pls_golite062009
substrate-specific transporter activity	3.75736033225611	bayes_pls_golite062009
catalytic activity	0.545407789079971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: