| Protein: | gsb-n-PA |
| Organism: | Drosophila melanogaster |
| Length: | 449 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gsb-n-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
240.0 | [0..22] | [291..1] |
|
Region A: Residues: [1-175] |
1 11 21 31 41 51
| | | | | |
1 MDMSSANSLR PLFAGYPFQG QGRVNQLGGV FINGRPLPNH IRLKIVEMAA SGVRPCVISR 60
61 QLRVSHGCVS KILNRYQETG SIRPGVIGGS KPKVTSPEIE TRIDELRKEN PSIFSWEIRE 120
121 KLIKEGFADP PSTSSISRLL RGSDRGSEDG RKDYTINGIL GGRDSDISDT ESEPG
|
| Detection Method: |  |
| Confidence: | 45.30103 |
| Match: | 1pdnC |
| Description: | Paired protein (prd) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| protein deacetylase activity | 0.0943601066056998 | bayes_pls_golite062009 |
| histone deacetylase activity | 0.0802156998596484 | bayes_pls_golite062009 |
|
Region A: Residues: [176-288] |
1 11 21 31 41 51
| | | | | |
1 IPLKRKQRRS RTTFTAEQLE ALERAFSRTQ YPDVYTREEL AQTTALTEAR IQVWFSNRRA 60
61 RLRKHSGGSN SGLSPMNSGS SNVGVGVGLS GATAPLGYGP LGVGSMAGYS PAP
|
| Detection Method: | |
| Confidence: | 7.39794 |
| Match: | 2cueA |
| Description: | Solution structure of the homeobox domain of the human paired box protein Pax-6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| protein deacetylase activity | 0.0943601066056998 | bayes_pls_golite062009 |
| histone deacetylase activity | 0.0802156998596484 | bayes_pls_golite062009 |
|
Region A: Residues: [289-449] |
1 11 21 31 41 51
| | | | | |
1 GTTATGAGMN DGVHHAAHAP SSHHSAATAA AAAHHHTQMG GYDLVQSAAQ HGFPGGFAQP 60
61 GHFGSQNYYH QDYSKLTIDD FSKLTADSVS KISPSLHLSD NYSKLEAPSN WSQAAYHAAA 120
121 NYNAHVAQHQ LNDYAAAAAH GNPASAYSHP LPTQGQAKYW S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
