YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL28-PD, RpL28-...
Organism:	Drosophila melanogaster
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL28-PD, RpL28-....

Description	E-value	Query Range	Subject Range
gi\|20976820 - gi\|20976820\|gb\|AAM27485.1\| GH04183p [Drosophila melanogaster] gi\|220959846 - gi\|220959846\|gb\|ACL92466.1\| RpL28-PA [synthetic construct]	182.0	[0..1]	[144..93]
gi\|73947458 - gi\|73947458\|ref\|XP_533581.2\| PREDICTED: similar to ribosomal protein L28 [Canis familiaris]	172.0	[0..2]	[141..122]
gi\|45188222, gi\|... - gi\|45188222\|ref\|NP_984445.1\| ADR349Wp [Ashbya gossypii ATCC 10895], gi\|44983066\|gb\|AAS52269.1\| ADR34... gi\|44983066 - gi\|44983066\|gb\|AAS52269.1\| ADR349Wp [Ashbya gossypii ATCC 10895]	169.0	[0..4]	[143..23]
gi\|49099270, gi\|... - gi\|67540884\|ref\|XP_664216.1\| hypothetical protein AN6612.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	168.0	[0..4]	[139..3]
gi\|90297938, gi\|... - gi\|90297938\|gb\|EAS27569.1\| hypothetical protein CIMG_10174 [Coccidioides immitis RS], gi\|119173385\|r...	167.0	[0..4]	[144..3]
gi\|58268774, gi\|... - gi\|58268774\|ref\|XP_571543.1\| Glutathione S-transferase 6 [Cryptococcus neoformans var. neoformans JE...	167.0	[0..4]	[144..3]
gi\|49647448 - gi\|49647448\|emb\|CAG81884.1\| YALI0C08052p [Yarrowia lipolytica] gi\|50548223, gi\|... - gi\|50548223\|ref\|XP_501581.1\| YALI0C08052p [Yarrowia lipolytica], gi\|49647448\|emb\|CAG81884.1\| YALI0C0...	163.0	[0..1]	[143..1]
gi\|134113086, gi... - gi\|50257465\|gb\|EAL20172.1\| hypothetical protein CNBF2480 [Cryptococcus neoformans var. neoformans B-...	162.0	[0..4]	[144..3]
gi\|125977290, gi... - gi\|54641427\|gb\|EAL30177.1\| GA11782 [Drosophila pseudoobscura pseudoobscura], gi\|125977290\|ref\|XP_001... gi\|194115666, gi... - gi\|195174386\|ref\|XP_002027956.1\| GL21281 [Drosophila persimilis], gi\|194115666\|gb\|EDW37709.1\| GL2128... gi\|125977290\|ref... - GA11782-PA [Drosophila pseudoobscura], GA11782 [Drosophila pseudoobscura pseudoobscura]	162.0	[0..1]	[144..1]
gi\|159122439 - gi\|159122439\|gb\|EDP47560.1\| ribosomal large subunit biogenesis protein MAK16, putative [Aspergillus ... gi\|66845279, gi\|... - gi\|70984272\|ref\|XP_747652.1\| ribosomal large subunit biogenesis protein MAK16 [Aspergillus fumigatus...	162.0	[0..4]	[139..3]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSHLNWL IIRNNNAFLL KKRDVKKPFS TEPNNLASVS SYRYSGIVHK KTLGVVPAAD  60
   61 KKGFTAVLKK GKYAQRPAKN TVRVDFKAGP RRSLKKLKNL LIGSKYRKDL TQAALRRASA 120
  121 VLRSQKPAPV KGKKAEFAKG KKPE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.221849
Match:	PF01778.8
Description:	No description for PF01778.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.843	N/A	N/A	b.60.1	Lipocalins
View	Download	0.708	N/A	N/A	b.60.1	Lipocalins
View	Download	0.705	N/A	N/A	b.60.1	Lipocalins
View	Download	0.666	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.652	N/A	N/A	b.60.1	Lipocalins
View	Download	0.613	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.607	N/A	N/A	b.55.1	PH domain-like
View	Download	0.538	N/A	N/A	c.52.3	Eukaryotic RPB5 N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits